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The map label for this gene is ykgF [H]

Identifier: 126447093

GI number: 126447093

Start: 819935

End: 821368

Strand: Direct

Name: ykgF [H]

Synonym: BMA10247_A0868

Alternate gene names: 126447093

Gene position: 819935-821368 (Clockwise)

Preceding gene: 126447721

Following gene: 126447772

Centisome position: 34.85

GC content: 69.25

Gene sequence:

>1434_bases
TTGAATGCGCCGGCGACGTTCAAGGCGCGCGCGCGCGCCGCGCTGCACGACGCGCAGCTTCAGGAAGCGCTCGGCATGCT
CGGCGAGGGCTGGATCGAGAAGCGGCGGCGCGTCGTGTCGCTCTTGCCCGAGTTCGAGATGCTGCGCGAGCGCGCGAAGG
CGGTGAAGGACCACGTGCTCGCGAACCTCGACACGTATCTCGAACGCTATGAAGCGGCCGTCACGCGCGCGGGCGGCGTC
GTCCACTGGGCGAGCGACGCGGCGCAGGCGCGCGAGATCGTGCTGAGGATCTGCCGCGACGCGAACGCGAAGACCATCAC
GCGCGGCAAGTCGATGGTCGGCGAGGAGATCGGGCTGCCCGCCGCGCTCGAGGGCGCGGGCATGGAAGTCGTCGAGACCG
ATCTCGGCGAATACATCGTGCAGCTCGCGCACGAAGGGCCGAGCCACATCGTGTTTCCGGCGCTGCACAAGACGATCGGT
CAGGTAACCGAACTGTTCGCCGGGAACCATTCGAGCGCGCAGTACGACGGGCCGCGCGAAACCGTTGCGGACGTCGTCGG
CGAGGCGCGCCAGGTATTGCGCGAGAAGTTCTTCGTCGCGGACGTGGGCATCACCGGCGCGAACTACCTCGTTGCCGAAA
CGGGGTCGAACGTGATCTGCACGAACGAGGGCAACGGCGATCTGACGTCGACGCTCGCGCGCGTGCACATCGTCACGGCG
GGCATCGAACGCGTCGTGCCGACGCTCGACGACGTCGCGCTGTTCGTGCGCCTGCTCGGCCGCAGCGCGACGGGGCAGGA
GATCACGTCGTACACGACGTTCAGCACGGGCCCGAGGCGCGGCGACGATCTCGACGGCCCGCAGGAATACCACGTGGTGC
TCGTCGACAACGGCCGCACGCGGATGCTCGCCGGCGAATTCCGCGACATGCTGCGCTGCATCCGCTGCGGCGCGTGCATG
AACCATTGCCCGGTGTACGGCGCGGTCGGCGGCCATGCATACGGCTGGGTCTATCCGGGGCCGATGGGCGCCGTTCTCAC
GCCGCTGCTGCAGGGCATCGAGCACGATACCGATCTGCCGAACGCGTGCACGCTGAACGGGCGCTGCGCGGAAGTGTGTC
CGGTGAAGATTCCGCTGCCGACGCTGCTCAAGAAGCTGCGCGGGATGCAGTTCGACGCGCGGCTCACCGCGCCCGGCACG
CGTTTCTTGTTGCGCGCGTTCGGCGCGATCGCGCGGCGGCCGGCGCTCTATCACTGGCTCACGCGCGTCGGCGCGCGCGC
GCTGCGCGCGCTCGGCGGCAAGCGCGGCAGCATCGCGCGCGTGCCGTTCGCCTCCGGCTGGACCGATTCGCGCGAATTGC
CGAAGCCGCCGCCGCGCACGTTCTTCGAGACGTGGGACGCGACGTGCACGAATCAACCGGAGGTGCGTCGATGA

Upstream 100 bases:

>100_bases
AGCGCGAGGGCAGCGCGGTGCGCGTCTATCACGTCGCCGAAGTGCTGGCGGGCATGAACGTCGAGCCGATCTGCGGGGAG
GGCGAATGAGCGCGACACCC

Downstream 100 bases:

>100_bases
GCGCGCGCGACGACATTCTCGGCCGTATCCGCGCGGCGCTCGGCAGCGAGCGCGCGCGGCTTGCCGCGCAGTTTCCGGCG
CCGGTGCAAGCGAAGGGCGC

Product: iron-sulfur cluster-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MNAPATFKARARAALHDAQLQEALGMLGEGWIEKRRRVVSLLPEFEMLRERAKAVKDHVLANLDTYLERYEAAVTRAGGV
VHWASDAAQAREIVLRICRDANAKTITRGKSMVGEEIGLPAALEGAGMEVVETDLGEYIVQLAHEGPSHIVFPALHKTIG
QVTELFAGNHSSAQYDGPRETVADVVGEARQVLREKFFVADVGITGANYLVAETGSNVICTNEGNGDLTSTLARVHIVTA
GIERVVPTLDDVALFVRLLGRSATGQEITSYTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACM
NHCPVYGAVGGHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPVKIPLPTLLKKLRGMQFDARLTAPGT
RFLLRAFGAIARRPALYHWLTRVGARALRALGGKRGSIARVPFASGWTDSRELPKPPPRTFFETWDATCTNQPEVRR

Sequences:

>Translated_477_residues
MNAPATFKARARAALHDAQLQEALGMLGEGWIEKRRRVVSLLPEFEMLRERAKAVKDHVLANLDTYLERYEAAVTRAGGV
VHWASDAAQAREIVLRICRDANAKTITRGKSMVGEEIGLPAALEGAGMEVVETDLGEYIVQLAHEGPSHIVFPALHKTIG
QVTELFAGNHSSAQYDGPRETVADVVGEARQVLREKFFVADVGITGANYLVAETGSNVICTNEGNGDLTSTLARVHIVTA
GIERVVPTLDDVALFVRLLGRSATGQEITSYTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACM
NHCPVYGAVGGHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPVKIPLPTLLKKLRGMQFDARLTAPGT
RFLLRAFGAIARRPALYHWLTRVGARALRALGGKRGSIARVPFASGWTDSRELPKPPPRTFFETWDATCTNQPEVRR
>Mature_477_residues
MNAPATFKARARAALHDAQLQEALGMLGEGWIEKRRRVVSLLPEFEMLRERAKAVKDHVLANLDTYLERYEAAVTRAGGV
VHWASDAAQAREIVLRICRDANAKTITRGKSMVGEEIGLPAALEGAGMEVVETDLGEYIVQLAHEGPSHIVFPALHKTIG
QVTELFAGNHSSAQYDGPRETVADVVGEARQVLREKFFVADVGITGANYLVAETGSNVICTNEGNGDLTSTLARVHIVTA
GIERVVPTLDDVALFVRLLGRSATGQEITSYTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACM
NHCPVYGAVGGHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPVKIPLPTLLKKLRGMQFDARLTAPGT
RFLLRAFGAIARRPALYHWLTRVGARALRALGGKRGSIARVPFASGWTDSRELPKPPPRTFFETWDATCTNQPEVRR

Specific function: Unknown

COG id: COG1139

COG function: function code C; Uncharacterized conserved protein containing a ferredoxin-like domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1786498, Length=459, Percent_Identity=41.6122004357298, Blast_Score=375, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR003741
- InterPro:   IPR004452
- InterPro:   IPR002698
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: PF02589 DUF162 [H]

EC number: NA

Molecular weight: Translated: 52028; Mature: 52028

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPATFKARARAALHDAQLQEALGMLGEGWIEKRRRVVSLLPEFEMLRERAKAVKDHVL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ANLDTYLERYEAAVTRAGGVVHWASDAAQAREIVLRICRDANAKTITRGKSMVGEEIGLP
HHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
AALEGAGMEVVETDLGEYIVQLAHEGPSHIVFPALHKTIGQVTELFAGNHSSAQYDGPRE
CEECCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
TVADVVGEARQVLREKFFVADVGITGANYLVAETGSNVICTNEGNGDLTSTLARVHIVTA
HHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHH
GIERVVPTLDDVALFVRLLGRSATGQEITSYTTFSTGPRRGDDLDGPQEYHVVLVDNGRT
HHHHHHCCHHHHHHHHHHHCCCCCCCHHHHEEEECCCCCCCCCCCCCCCEEEEEEECCCC
RMLAGEFRDMLRCIRCGACMNHCPVYGAVGGHAYGWVYPGPMGAVLTPLLQGIEHDTDLP
CHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
NACTLNGRCAEVCPVKIPLPTLLKKLRGMQFDARLTAPGTRFLLRAFGAIARRPALYHWL
CCEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHCHHHHHHH
TRVGARALRALGGKRGSIARVPFASGWTDSRELPKPPPRTFFETWDATCTNQPEVRR
HHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNAPATFKARARAALHDAQLQEALGMLGEGWIEKRRRVVSLLPEFEMLRERAKAVKDHVL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ANLDTYLERYEAAVTRAGGVVHWASDAAQAREIVLRICRDANAKTITRGKSMVGEEIGLP
HHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
AALEGAGMEVVETDLGEYIVQLAHEGPSHIVFPALHKTIGQVTELFAGNHSSAQYDGPRE
CEECCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
TVADVVGEARQVLREKFFVADVGITGANYLVAETGSNVICTNEGNGDLTSTLARVHIVTA
HHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHH
GIERVVPTLDDVALFVRLLGRSATGQEITSYTTFSTGPRRGDDLDGPQEYHVVLVDNGRT
HHHHHHCCHHHHHHHHHHHCCCCCCCHHHHEEEECCCCCCCCCCCCCCCEEEEEEECCCC
RMLAGEFRDMLRCIRCGACMNHCPVYGAVGGHAYGWVYPGPMGAVLTPLLQGIEHDTDLP
CHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
NACTLNGRCAEVCPVKIPLPTLLKKLRGMQFDARLTAPGTRFLLRAFGAIARRPALYHWL
CCEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHCHHHHHHH
TRVGARALRALGGKRGSIARVPFASGWTDSRELPKPPPRTFFETWDATCTNQPEVRR
HHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]