Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
---|---|
Accession | NC_009079 |
Length | 2,352,693 |
Click here to switch to the map view.
The map label for this gene is ybaL [H]
Identifier: 126447028
GI number: 126447028
Start: 1185105
End: 1186838
Strand: Reverse
Name: ybaL [H]
Synonym: BMA10247_A1216
Alternate gene names: 126447028
Gene position: 1186838-1185105 (Counterclockwise)
Preceding gene: 126447526
Following gene: 126447937
Centisome position: 50.45
GC content: 70.18
Gene sequence:
>1734_bases ATGCCTCATGACGTCAGTCTGATTGCCTTGCTCGCGGCCGGCTTCGGTCTCGCGATGATCTTCGGTTACCTCGCGTCGCT GCTGAAGATGCCGCCGCTCGTCGGCTATCTGCTCGCCGGCATCGTGATGGGGCCCGGCACGCCCGGCTTCGTCGGCGATC TCGCACTCGCGCAGCAGCTCGCCGAGATCGGCGTGATGCTGCTGATGTTCGGCGTCGGTCTGCATTTCTCGCTCGGCGAT CTGCTCTCGGTGCGCAAGATCGCGCTGCCCGGCGCGATCGTCCAGATCGCGGTGGCGACCGCGCTCGGCGCCGGGCTCGC GCTATGGTGGGGCTGGAGCGTCGGCGGCGCGCTCGTGTTCGGCCTTTCGCTGTCGGTCGCGAGCACGGTCGTGCTGTTGC GCGCGCTCGAAGGGCGGGGGCTGATCGAATCGGTCAACGGGCGGATCGCGGTCGGCTGGCTCGTCGTCGAGGATCTCGTG ATGGTGCTCGTGCTCGTGCTGCTGCCGCCGCTCGCGGCGCTGCTCGGCGGCGGCGGCGCGCCCGCGCACGGCGACGCAGC CGTGCACGCGGGCGAGGCGGGCGGCAGCCTGTGGGCCGCGCTCGGCGTCACGCTGCTGAAGGTCGCGGCGTTCGTCGCGC TGATGCTCGTTGTCGGCAAGCGCGTGTTTCCGCGCATTCTGTGGCTCGTCGCGCGCACCGGCTCGCGCGAGCTGTTCACG CTTTGCATGATCGCGGCGGCCGTCGGCGTCGCGTTCGGTGCGGCGAAGCTGTTCGACGTGTCGTTCGCGCTCGGCGCGTT CTTCGCCGGGATGATGATGCGCGAATCGGAGTTCAGCCGCCGCGCGGCCGACGAGACGCTGCCGTTGCGCGACGCGTTCT CGGTCCTCTTCTTCATCTCGGTCGGCATGCTGTTCGATCCGCGCGTGCTGATCGACGAGCCGCTGCACGTGCTGGAAGTG GCCGCGATCGTCGTGCTCGGCAAGACGCTCGCGGCGGTCGCGCTCGTGCTGGCGTTCCGCTATCCGCTGAACACCGCGCT CACGGTCGGCGTGAGCCTCGCGCAGATCGGCGAGTTCTCGTTCATTCTCGCCAGCCTCGGGCGCGGGCTGGGGTTGCTGT CGGCCGAAGGGCAGAGCCTGATTCTCGCGGTCGCGCTGCTGTCGATCGCGCTCAACACGCTGCTGTTCGCCGCGGTCGAT CCGGTGCTCGCGTGGATCCGCAAGCGCTCGGCGTTCGCGCGCCGGCTCGAGTCGCGCGACGATCCGCTCGCCGCGCTGCC GATGTCGACGCCGCAGGCGCATCTGACGGGGCAGGTCGTGATCGTCGGCTACGGGCGCGTCGGCACGCGGATCGCGCACG CGCTCGACGCGCGCGGGATCGCGTACGTCGTCGTCGAGCAGAATCGCGAGACGGTCGAGAAGCTGCGGGCGGACGGCGTC GCGGTCGAGCCGATCGTGCTCGTGCAGGCGCACATCGCGCGCGCGGGGATGCTCGTCGTCACGCTGCCGGACGTGTTCGA CGTGCGGCAGATCGTCGATATCTCGCGCACGCTGAATCCGGCGATCGAGATCGCGCTTTGCACGAACAGCGACGAGGAGG CGGCGCTGCTCGCGAACGAAGGGATGGGCGAAGTGTTCGTGAGCGAGACCGAGCTCGCGCATGGCATGACCGAGCACGTG CTCGCGCGGATGGGCGCGGGCGAGGCGCACGCGCGGCGCTCGGCCGCGCATTGA
Upstream 100 bases:
>100_bases CCGCAATCGTCGACGACAAATTTTGGCCGGTTCGCGCATTTGTCGCCGCGATCCCTTATTCTTCAATTCTTACGAAACAG TTACATTCAATGGAGCGCGG
Downstream 100 bases:
>100_bases GTGGACGGCGCACGCGCGCATCGTTCGCCGCGCGTCAATAAAACGATTCGAGCGTCAACTCCTGCGCCATCACGCGATTG CCCGCGAGCAGCCCGCCGTC
Product: putative potassium efflux system protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 577; Mature: 576
Protein sequence:
>577_residues MPHDVSLIALLAAGFGLAMIFGYLASLLKMPPLVGYLLAGIVMGPGTPGFVGDLALAQQLAEIGVMLLMFGVGLHFSLGD LLSVRKIALPGAIVQIAVATALGAGLALWWGWSVGGALVFGLSLSVASTVVLLRALEGRGLIESVNGRIAVGWLVVEDLV MVLVLVLLPPLAALLGGGGAPAHGDAAVHAGEAGGSLWAALGVTLLKVAAFVALMLVVGKRVFPRILWLVARTGSRELFT LCMIAAAVGVAFGAAKLFDVSFALGAFFAGMMMRESEFSRRAADETLPLRDAFSVLFFISVGMLFDPRVLIDEPLHVLEV AAIVVLGKTLAAVALVLAFRYPLNTALTVGVSLAQIGEFSFILASLGRGLGLLSAEGQSLILAVALLSIALNTLLFAAVD PVLAWIRKRSAFARRLESRDDPLAALPMSTPQAHLTGQVVIVGYGRVGTRIAHALDARGIAYVVVEQNRETVEKLRADGV AVEPIVLVQAHIARAGMLVVTLPDVFDVRQIVDISRTLNPAIEIALCTNSDEEAALLANEGMGEVFVSETELAHGMTEHV LARMGAGEAHARRSAAH
Sequences:
>Translated_577_residues MPHDVSLIALLAAGFGLAMIFGYLASLLKMPPLVGYLLAGIVMGPGTPGFVGDLALAQQLAEIGVMLLMFGVGLHFSLGD LLSVRKIALPGAIVQIAVATALGAGLALWWGWSVGGALVFGLSLSVASTVVLLRALEGRGLIESVNGRIAVGWLVVEDLV MVLVLVLLPPLAALLGGGGAPAHGDAAVHAGEAGGSLWAALGVTLLKVAAFVALMLVVGKRVFPRILWLVARTGSRELFT LCMIAAAVGVAFGAAKLFDVSFALGAFFAGMMMRESEFSRRAADETLPLRDAFSVLFFISVGMLFDPRVLIDEPLHVLEV AAIVVLGKTLAAVALVLAFRYPLNTALTVGVSLAQIGEFSFILASLGRGLGLLSAEGQSLILAVALLSIALNTLLFAAVD PVLAWIRKRSAFARRLESRDDPLAALPMSTPQAHLTGQVVIVGYGRVGTRIAHALDARGIAYVVVEQNRETVEKLRADGV AVEPIVLVQAHIARAGMLVVTLPDVFDVRQIVDISRTLNPAIEIALCTNSDEEAALLANEGMGEVFVSETELAHGMTEHV LARMGAGEAHARRSAAH >Mature_576_residues PHDVSLIALLAAGFGLAMIFGYLASLLKMPPLVGYLLAGIVMGPGTPGFVGDLALAQQLAEIGVMLLMFGVGLHFSLGDL LSVRKIALPGAIVQIAVATALGAGLALWWGWSVGGALVFGLSLSVASTVVLLRALEGRGLIESVNGRIAVGWLVVEDLVM VLVLVLLPPLAALLGGGGAPAHGDAAVHAGEAGGSLWAALGVTLLKVAAFVALMLVVGKRVFPRILWLVARTGSRELFTL CMIAAAVGVAFGAAKLFDVSFALGAFFAGMMMRESEFSRRAADETLPLRDAFSVLFFISVGMLFDPRVLIDEPLHVLEVA AIVVLGKTLAAVALVLAFRYPLNTALTVGVSLAQIGEFSFILASLGRGLGLLSAEGQSLILAVALLSIALNTLLFAAVDP VLAWIRKRSAFARRLESRDDPLAALPMSTPQAHLTGQVVIVGYGRVGTRIAHALDARGIAYVVVEQNRETVEKLRADGVA VEPIVLVQAHIARAGMLVVTLPDVFDVRQIVDISRTLNPAIEIALCTNSDEEAALLANEGMGEVFVSETELAHGMTEHVL ARMGAGEAHARRSAAH
Specific function: Unknown
COG id: COG4651
COG function: function code P; Kef-type K+ transport system, predicted NAD-binding component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RCK N-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI157388921, Length=375, Percent_Identity=28.8, Blast_Score=103, Evalue=5e-22, Organism=Escherichia coli, GI1786685, Length=564, Percent_Identity=50.354609929078, Blast_Score=465, Evalue=1e-132, Organism=Escherichia coli, GI1789749, Length=567, Percent_Identity=28.9241622574956, Blast_Score=142, Evalue=6e-35, Organism=Escherichia coli, GI1786232, Length=508, Percent_Identity=26.9685039370079, Blast_Score=129, Evalue=6e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006153 - InterPro: IPR004771 - InterPro: IPR016040 - InterPro: IPR003148 [H]
Pfam domain/function: PF00999 Na_H_Exchanger; PF02254 TrkA_N [H]
EC number: NA
Molecular weight: Translated: 60340; Mature: 60209
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHDVSLIALLAAGFGLAMIFGYLASLLKMPPLVGYLLAGIVMGPGTPGFVGDLALAQQL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH AEIGVMLLMFGVGLHFSLGDLLSVRKIALPGAIVQIAVATALGAGLALWWGWSVGGALVF HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLSLSVASTVVLLRALEGRGLIESVNGRIAVGWLVVEDLVMVLVLVLLPPLAALLGGGGA HHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PAHGDAAVHAGEAGGSLWAALGVTLLKVAAFVALMLVVGKRVFPRILWLVARTGSRELFT CCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH LCMIAAAVGVAFGAAKLFDVSFALGAFFAGMMMRESEFSRRAADETLPLRDAFSVLFFIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH VGMLFDPRVLIDEPLHVLEVAAIVVLGKTLAAVALVLAFRYPLNTALTVGVSLAQIGEFS HHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH FILASLGRGLGLLSAEGQSLILAVALLSIALNTLLFAAVDPVLAWIRKRSAFARRLESRD HHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DPLAALPMSTPQAHLTGQVVIVGYGRVGTRIAHALDARGIAYVVVEQNRETVEKLRADGV CCCEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC AVEPIVLVQAHIARAGMLVVTLPDVFDVRQIVDISRTLNPAIEIALCTNSDEEAALLANE EECHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHEEECC GMGEVFVSETELAHGMTEHVLARMGAGEAHARRSAAH CCCCEEECHHHHHHCHHHHHHHHCCCCHHHHHHCCCC >Mature Secondary Structure PHDVSLIALLAAGFGLAMIFGYLASLLKMPPLVGYLLAGIVMGPGTPGFVGDLALAQQL CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH AEIGVMLLMFGVGLHFSLGDLLSVRKIALPGAIVQIAVATALGAGLALWWGWSVGGALVF HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLSLSVASTVVLLRALEGRGLIESVNGRIAVGWLVVEDLVMVLVLVLLPPLAALLGGGGA HHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PAHGDAAVHAGEAGGSLWAALGVTLLKVAAFVALMLVVGKRVFPRILWLVARTGSRELFT CCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH LCMIAAAVGVAFGAAKLFDVSFALGAFFAGMMMRESEFSRRAADETLPLRDAFSVLFFIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH VGMLFDPRVLIDEPLHVLEVAAIVVLGKTLAAVALVLAFRYPLNTALTVGVSLAQIGEFS HHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH FILASLGRGLGLLSAEGQSLILAVALLSIALNTLLFAAVDPVLAWIRKRSAFARRLESRD HHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DPLAALPMSTPQAHLTGQVVIVGYGRVGTRIAHALDARGIAYVVVEQNRETVEKLRADGV CCCEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC AVEPIVLVQAHIARAGMLVVTLPDVFDVRQIVDISRTLNPAIEIALCTNSDEEAALLANE EECHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHEEECC GMGEVFVSETELAHGMTEHVLARMGAGEAHARRSAAH CCCCEEECHHHHHHCHHHHHHHHCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503; 7721718 [H]