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The map label for this gene is yagI [H]

Identifier: 126446648

GI number: 126446648

Start: 2168139

End: 2168888

Strand: Reverse

Name: yagI [H]

Synonym: BMA10247_A2228

Alternate gene names: 126446648

Gene position: 2168888-2168139 (Counterclockwise)

Preceding gene: 126447838

Following gene: 126447084

Centisome position: 92.19

GC content: 70.53

Gene sequence:

>750_bases
ATGACGAATCAAACGGATGGCGGCGTGGCCGCGGTCAATCGGGCGCTGGCGGCGCTCGTCGCGTTCGGCGAAGCGCCGGG
CGGCCTGACGCTCGCTCAGGTCAGCGAAGCGTCGGGCGTCAACATGAGCACGTTGCTGCGGATGTTCGAGTCGCTCGAGC
GGTTCCGCTTCATCAAACGGCTCAACGACGGCCGCTACGTGCTCGGGCCCGCGGTGTTCCAGCTCGGGATGATGTATCGC
GAGTCGTTCCAGTTGCGCGAGCACGTGATGCCCGTGCTCGACGCGCTCGGCGCGGAGACGGGCGAAACCACCGCGTTCTA
CGTGCGCGAGGGCGACCAGCGCGTATGCCTGTTCCGAGTGCATCCGCGGCGCGCGGTGCGCACTTATCTGCGCGAGGGCG
ATCGCTATCCGCTCGACGTGGGCGCTGCGGGGCGCGTGCTGCTCGCGTTTTCCGGCGCGCGCGGCGGCAGCTTCGACAAG
ACGGCCGCGCAGGGCTATGCGGTGTCGCTCGGCGAGCGCGATCCGGACAGCGCGGCGATCGCGTGCCCGGTGTTCGGCGT
CGGCCGCGCGCTGATCGGCGCGCTGTCGCTCGGCGTGCCGCGCTTTCGCTTCAACAAGAAGGTGCAGGCCGATTACCTGC
CGCGCGTGCAGGCGGCCGCGAACGCGCTCACGCATGCGCTCGGCGGCGATCTGCCGCCGGCGGCGGGCGTCGCGCAGGTC
GTCGATCTGTTCGGCGCGGCGCACGAATGA

Upstream 100 bases:

>100_bases
TCGTATAATGAAAGTAACTTTCAAAAATTGGAGCGCGGCCGATTCGCGGCGCGAGAAGGGCGCAGCAAGCACGCGATAAG
GCCGTGACGACGAGGCAGAC

Downstream 100 bases:

>100_bases
CGTGAGGACGGCGGGCTCCGGCATGCGCCCGGGCGCCGGCCGGTGACGCAACGGATTCGATTCGGGGGCAACGATGGATG
TTCGACAAACGCAGGTCGAG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MTNQTDGGVAAVNRALAALVAFGEAPGGLTLAQVSEASGVNMSTLLRMFESLERFRFIKRLNDGRYVLGPAVFQLGMMYR
ESFQLREHVMPVLDALGAETGETTAFYVREGDQRVCLFRVHPRRAVRTYLREGDRYPLDVGAAGRVLLAFSGARGGSFDK
TAAQGYAVSLGERDPDSAAIACPVFGVGRALIGALSLGVPRFRFNKKVQADYLPRVQAAANALTHALGGDLPPAAGVAQV
VDLFGAAHE

Sequences:

>Translated_249_residues
MTNQTDGGVAAVNRALAALVAFGEAPGGLTLAQVSEASGVNMSTLLRMFESLERFRFIKRLNDGRYVLGPAVFQLGMMYR
ESFQLREHVMPVLDALGAETGETTAFYVREGDQRVCLFRVHPRRAVRTYLREGDRYPLDVGAAGRVLLAFSGARGGSFDK
TAAQGYAVSLGERDPDSAAIACPVFGVGRALIGALSLGVPRFRFNKKVQADYLPRVQAAANALTHALGGDLPPAAGVAQV
VDLFGAAHE
>Mature_248_residues
TNQTDGGVAAVNRALAALVAFGEAPGGLTLAQVSEASGVNMSTLLRMFESLERFRFIKRLNDGRYVLGPAVFQLGMMYRE
SFQLREHVMPVLDALGAETGETTAFYVREGDQRVCLFRVHPRRAVRTYLREGDRYPLDVGAAGRVLLAFSGARGGSFDKT
AAQGYAVSLGERDPDSAAIACPVFGVGRALIGALSLGVPRFRFNKKVQADYLPRVQAAANALTHALGGDLPPAAGVAQVV
DLFGAAHE

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=246, Percent_Identity=26.8292682926829, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789999, Length=250, Percent_Identity=24.4, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 26588; Mature: 26457

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNQTDGGVAAVNRALAALVAFGEAPGGLTLAQVSEASGVNMSTLLRMFESLERFRFIKR
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEHHCCCCCCHHHHHHHHHHHHHHHHHHH
LNDGRYVLGPAVFQLGMMYRESFQLREHVMPVLDALGAETGETTAFYVREGDQRVCLFRV
CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEE
HPRRAVRTYLREGDRYPLDVGAAGRVLLAFSGARGGSFDKTAAQGYAVSLGERDPDSAAI
CHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHCCEEEECCCCCCCCCEE
ACPVFGVGRALIGALSLGVPRFRFNKKVQADYLPRVQAAANALTHALGGDLPPAAGVAQV
ECHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
VDLFGAAHE
HHHHHCCCC
>Mature Secondary Structure 
TNQTDGGVAAVNRALAALVAFGEAPGGLTLAQVSEASGVNMSTLLRMFESLERFRFIKR
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEHHCCCCCCHHHHHHHHHHHHHHHHHHH
LNDGRYVLGPAVFQLGMMYRESFQLREHVMPVLDALGAETGETTAFYVREGDQRVCLFRV
CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEE
HPRRAVRTYLREGDRYPLDVGAAGRVLLAFSGARGGSFDKTAAQGYAVSLGERDPDSAAI
CHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHCCEEEECCCCCCCCCEE
ACPVFGVGRALIGALSLGVPRFRFNKKVQADYLPRVQAAANALTHALGGDLPPAAGVAQV
ECHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
VDLFGAAHE
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]