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The map label for this gene is ybfI [H]

Identifier: 126446633

GI number: 126446633

Start: 1349040

End: 1349912

Strand: Direct

Name: ybfI [H]

Synonym: BMA10247_A1383

Alternate gene names: 126446633

Gene position: 1349040-1349912 (Clockwise)

Preceding gene: 126446423

Following gene: 126446556

Centisome position: 57.34

GC content: 67.47

Gene sequence:

>873_bases
GTGGCCAAGCTAGACCATCGCAACCAGTCGCGTTACTGGCACTCTCCCGGCATTTCAGGGGTCGATCTGTTGCTCGCCGA
CTTCACGACGCACGACTACGCGCCGCACGTGCACGATTCGCTTGTCGTCGCCGTCACGGAAGTCGGCGGTTCGGTGTTCA
AGAGCCGCGGGCAGACGCGCCTCGCCGAGCCGAACGCCGTGCTCGTGTTCAATCCGTGCGAGCCGCATTCGGGGCGCATG
GGCGGCAGCAGCCGCTGGCGCTACCGGTCGTTCTACCTCGCGGAAGCGGGCCTTTCCCGCGTGCTGACGTTGCTCGGCAT
GGCGCAGCCGCGCTTTTTCACGTCGAACGTGCTCGACGATCCTCAGCTCGTCGAACAGTTTCTCACCCTGCACCGCGCGA
TGGACGAGCAGGACGATCTGCTGCGGCAGCAGGAACTGCTCGTCAGCAGCTTCGGCACGCTGTTTTCGCGGCACGGGCTC
CAGGCCGGGCTCGGCGCCGGCCCCGGCTTCGGCACGAAGGCGGGCCTGCCGGCGCTCAAGCCCGCGCTCGATCTGATGAA
CGATTGCTTCGACCACGCGCTCACCCTCGAGCAGATCGCGGCGGCGGCGGGCCTCACGTCGTTCCAGCTGATCACCGCGT
TCAACCGCGTGATCGGCCTCACACCGCACGCGTACCTGAACCAGTTGAGGTTGCGCGCGGCGCTGCGCGAGCTGCAGGCC
GGCCGCTCGCTCGCCGACGCCGCGCTGACATCGGGCTTCTACGATCAAAGCGCGCTTTGCAACCACTTCAAGCGCACGTT
CGGGATGACGCCGATGCAGTACACGCGCGCGCTCGCGCCCGGCAAGCGCGCGCTCGCGCCGATCGGAATCTGA

Upstream 100 bases:

>100_bases
GACATCGAAACACCCGCCGGCGTGCGCGGCGCCCAGCACGCGCACGGAGCGGCCTCACCCGCCGCCGGCTGTTTCGTTTC
ATCGGAATCGGGGTTCGACC

Downstream 100 bases:

>100_bases
CGGCAACGGCCGCAGCCCGGCCGGCCGCCGCGCGGTTGCGCGCCGGACGCTCCGGCTCGTTCGGCTCGTTCGGCTCATCA
GGCTCGTCCAGCACGTCCGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MAKLDHRNQSRYWHSPGISGVDLLLADFTTHDYAPHVHDSLVVAVTEVGGSVFKSRGQTRLAEPNAVLVFNPCEPHSGRM
GGSSRWRYRSFYLAEAGLSRVLTLLGMAQPRFFTSNVLDDPQLVEQFLTLHRAMDEQDDLLRQQELLVSSFGTLFSRHGL
QAGLGAGPGFGTKAGLPALKPALDLMNDCFDHALTLEQIAAAAGLTSFQLITAFNRVIGLTPHAYLNQLRLRAALRELQA
GRSLADAALTSGFYDQSALCNHFKRTFGMTPMQYTRALAPGKRALAPIGI

Sequences:

>Translated_290_residues
MAKLDHRNQSRYWHSPGISGVDLLLADFTTHDYAPHVHDSLVVAVTEVGGSVFKSRGQTRLAEPNAVLVFNPCEPHSGRM
GGSSRWRYRSFYLAEAGLSRVLTLLGMAQPRFFTSNVLDDPQLVEQFLTLHRAMDEQDDLLRQQELLVSSFGTLFSRHGL
QAGLGAGPGFGTKAGLPALKPALDLMNDCFDHALTLEQIAAAAGLTSFQLITAFNRVIGLTPHAYLNQLRLRAALRELQA
GRSLADAALTSGFYDQSALCNHFKRTFGMTPMQYTRALAPGKRALAPIGI
>Mature_289_residues
AKLDHRNQSRYWHSPGISGVDLLLADFTTHDYAPHVHDSLVVAVTEVGGSVFKSRGQTRLAEPNAVLVFNPCEPHSGRMG
GSSRWRYRSFYLAEAGLSRVLTLLGMAQPRFFTSNVLDDPQLVEQFLTLHRAMDEQDDLLRQQELLVSSFGTLFSRHGLQ
AGLGAGPGFGTKAGLPALKPALDLMNDCFDHALTLEQIAAAAGLTSFQLITAFNRVIGLTPHAYLNQLRLRAALRELQAG
RSLADAALTSGFYDQSALCNHFKRTFGMTPMQYTRALAPGKRALAPIGI

Specific function: Transcription Activator For The Expression Of The Melab Operon. Melr Binds At Two Sites Located Upstream Of The Melab Transcription Site. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31721; Mature: 31589

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AKLDHRNQSRYWHSPGISGVDLLLADFTTHDYAPHVHDSLVVAVTEVGGSVFKSRGQTR
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCE
LAEPNAVLVFNPCEPHSGRMGGSSRWRYRSFYLAEAGLSRVLTLLGMAQPRFFTSNVLDD
ECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
PQLVEQFLTLHRAMDEQDDLLRQQELLVSSFGTLFSRHGLQAGLGAGPGFGTKAGLPALK
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCHHH
PALDLMNDCFDHALTLEQIAAAAGLTSFQLITAFNRVIGLTPHAYLNQLRLRAALRELQA
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GRSLADAALTSGFYDQSALCNHFKRTFGMTPMQYTRALAPGKRALAPIGI
CCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]