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The map label for this gene is ndoA [H]

Identifier: 126446448

GI number: 126446448

Start: 918586

End: 918903

Strand: Direct

Name: ndoA [H]

Synonym: BMA10247_A0970

Alternate gene names: 126446448

Gene position: 918586-918903 (Clockwise)

Preceding gene: 126447892

Following gene: 126446536

Centisome position: 39.04

GC content: 66.35

Gene sequence:

>318_bases
ATGTCTGAACAATGGGTTTGCGCCGGACACGCCGGCGCGCTGTCCGAGGATTCGCCGATCGAGTTCAAGCGCACCGACGG
CGTCGAGATCGGGATCTACCGCGTCGGCGACGACGTGTACGCGCTCGAGAACGTCTGCCCGCACGCGTATGCGCTGCTCA
CGCAAGGCTTCGTCGACGAGGGCACGGTCGAGTGCCCGCTGCACGAGGCCGTGTTCGACATCAAGACGGGCCAGTGCCTG
AAGGGGCCGGGCGGCCGCGCGCTGAAGACGTACGCGGTGCGGCTCGCCGGCGAGGAAATCCAGATCAAGGTGGAATGA

Upstream 100 bases:

>100_bases
TTATTTTGATCTCCGGATGACGCTCCTATAATCACCATCCATAAACTGACGTTCCGTATTTGGAACAATCAAGCGAGTCG
ACTTGAAGGAAGGGTGTGAG

Downstream 100 bases:

>100_bases
CATGAACGAGACGACCGTGAACTTCAATCCGTTGCTCATGCCGTGGCGCGCGCCGCAGCCGAACAACGTCGCGGGCAAGG
GGCAGATCGAGATTCCCGGG

Product: naphthalene 1,2-dioxygenase system ferredoxin component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MSEQWVCAGHAGALSEDSPIEFKRTDGVEIGIYRVGDDVYALENVCPHAYALLTQGFVDEGTVECPLHEAVFDIKTGQCL
KGPGGRALKTYAVRLAGEEIQIKVE

Sequences:

>Translated_105_residues
MSEQWVCAGHAGALSEDSPIEFKRTDGVEIGIYRVGDDVYALENVCPHAYALLTQGFVDEGTVECPLHEAVFDIKTGQCL
KGPGGRALKTYAVRLAGEEIQIKVE
>Mature_104_residues
SEQWVCAGHAGALSEDSPIEFKRTDGVEIGIYRVGDDVYALENVCPHAYALLTQGFVDEGTVECPLHEAVFDIKTGQCLK
GPGGRALKTYAVRLAGEEIQIKVE

Specific function: Component of naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into naphthalene to form cis- naphthalene dihydrodiol. This subunit is a 2Fe-2S ferredoxin that transfers electrons

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1788890, Length=76, Percent_Identity=40.7894736842105, Blast_Score=63, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941 [H]

Pfam domain/function: PF00355 Rieske [H]

EC number: NA

Molecular weight: Translated: 11383; Mature: 11252

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQWVCAGHAGALSEDSPIEFKRTDGVEIGIYRVGDDVYALENVCPHAYALLTQGFVDE
CCCCEEEECCCCCCCCCCCEEEEECCCEEEEEEEECCCEEEHHHCCCHHHHHHHCCCCCC
GTVECPLHEAVFDIKTGQCLKGPGGRALKTYAVRLAGEEIQIKVE
CEEECCCCHHEEECCCCCEECCCCCCEEEEEEEEECCCEEEEEEC
>Mature Secondary Structure 
SEQWVCAGHAGALSEDSPIEFKRTDGVEIGIYRVGDDVYALENVCPHAYALLTQGFVDE
CCCEEEECCCCCCCCCCCEEEEECCCEEEEEEEECCCEEEHHHCCCHHHHHHHCCCCCC
GTVECPLHEAVFDIKTGQCLKGPGGRALKTYAVRLAGEEIQIKVE
CEEECCCCHHEEECCCCCEECCCCCCEEEEEEEEECCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA