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The map label for this gene is ltrA [H]

Identifier: 126446435

GI number: 126446435

Start: 717865

End: 718857

Strand: Direct

Name: ltrA [H]

Synonym: BMA10247_A0781

Alternate gene names: 126446435

Gene position: 717865-718857 (Clockwise)

Preceding gene: 126446136

Following gene: 126447806

Centisome position: 30.51

GC content: 66.16

Gene sequence:

>993_bases
TTGTGGAATTGGAACGATGAAATGACTATCGACGCACATAACCTGAACGACTTGATGTACTTCTCTCAGGTGGTCGAGCA
CGGCGGTTTCTCGGCCGCGGAACGCGTGCTCGGCATCTCGAAATCGCGCCTGTCGCGGCGACTCACCGAGCTCGAGGCGA
CGCTCGGCGTGCGCCTGTTGCAGCGCTCGACGCGCAAGCTCGCGTTGACCGAGGCGGGCCAGCTTTTCTATCAGCATTGC
CAAGCAATGTTGTCGGAGGCGCAGGCCGCGATGAACGCGGTGCAGCAACTGCGCTCGGCGCCGCGCGGCACGGTGCGCGT
GAGCGTGCCCGTCACGGTGTCCCAGACGATGCTCTCGCGCCTGCTGCTGGAATTCCTGCGCCGCTATCCCGAGGTGCGCG
TGCAGATTCGCGTGACGAATCGCGTGATCGACCTGTTCGAAGATTCGATCGACGTCGCGCTGCGCGTACGATCCGAGCCG
CCGCAGAGCGCGAACATCGTCGTGCGGCCGCTGTGGCGCACCGAGCAGATGCTCGTCGGCGCGCCGAGCCTGCTGCAGCA
GAACGCGCCGCCCCTCGCGCCCGACGATCTGGCGGGGTTCGACACGCTCGATACGCCTTCCGGCGATGGGCGGCACGTGT
TCAACCTGATCGCGCCGGACGGCACGCGTCACACGCACGAGCACGAGCCGCGGCTCGTGACGGCGGACCTGATGACGATT
CGCGAGGCGGTGCTCGACGGGGGCGGAATCGCCGCGTTGCCGGAATCGATGTACGGCAATGCGTTGCGCGCGGGACAACT
GTCGCCGGTCATGCCGGGATGGACGCTGCCCGTGCCGCAGCTCTACGCGGTGTTCGTGTCGCGGCAGGGGATGCCGCCTG
CCGTGCGCGCGTTCGTCGATTACCTCGTCGAAAAGCTCGACAACGAACGCTACGAGGAACCGGGCTGTCCGGAGCGCGGC
GCGAAGGACACGCAGACGAAGATTTCGATCTGA

Upstream 100 bases:

>100_bases
GGAGGCTCTTGGAGTGACGGGAAATAGCGTTATTTTTGCAACGCAAGGCTATTATATTGAGCGAATTGCCGATTAAATCC
GCTCGATTCGCAATGGATCG

Downstream 100 bases:

>100_bases
CGAAACCGCAGGCGCGCGGGCGCATCGGTTTTGTCATTTGACGCGCGTCACGCAATCGGTAGTTTCAATCGGCCGCCGCT
TGAATGCGTGTCCGGCTCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MWNWNDEMTIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTEAGQLFYQHC
QAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLLEFLRRYPEVRVQIRVTNRVIDLFEDSIDVALRVRSEP
PQSANIVVRPLWRTEQMLVGAPSLLQQNAPPLAPDDLAGFDTLDTPSGDGRHVFNLIAPDGTRHTHEHEPRLVTADLMTI
REAVLDGGGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEKLDNERYEEPGCPERG
AKDTQTKISI

Sequences:

>Translated_330_residues
MWNWNDEMTIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTEAGQLFYQHC
QAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLLEFLRRYPEVRVQIRVTNRVIDLFEDSIDVALRVRSEP
PQSANIVVRPLWRTEQMLVGAPSLLQQNAPPLAPDDLAGFDTLDTPSGDGRHVFNLIAPDGTRHTHEHEPRLVTADLMTI
REAVLDGGGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEKLDNERYEEPGCPERG
AKDTQTKISI
>Mature_330_residues
MWNWNDEMTIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTEAGQLFYQHC
QAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLLEFLRRYPEVRVQIRVTNRVIDLFEDSIDVALRVRSEP
PQSANIVVRPLWRTEQMLVGAPSLLQQNAPPLAPDDLAGFDTLDTPSGDGRHVFNLIAPDGTRHTHEHEPRLVTADLMTI
REAVLDGGGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEKLDNERYEEPGCPERG
AKDTQTKISI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=31.8339100346021, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=32.9931972789116, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=27.8745644599303, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=27.3333333333333, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787128, Length=296, Percent_Identity=26.3513513513513, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=26.5993265993266, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787589, Length=295, Percent_Identity=27.1186440677966, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=25.7627118644068, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI157672245, Length=138, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789173, Length=306, Percent_Identity=26.1437908496732, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787601, Length=172, Percent_Identity=23.2558139534884, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788297, Length=277, Percent_Identity=25.2707581227437, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788748, Length=121, Percent_Identity=33.0578512396694, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789506, Length=316, Percent_Identity=21.8354430379747, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788706, Length=181, Percent_Identity=28.1767955801105, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1790011, Length=301, Percent_Identity=20.9302325581395, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787879, Length=304, Percent_Identity=27.9605263157895, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI145693105, Length=124, Percent_Identity=26.6129032258064, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36774; Mature: 36774

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWNWNDEMTIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLL
CCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
QRSTRKLALTEAGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
LLLEFLRRYPEVRVQIRVTNRVIDLFEDSIDVALRVRSEPPQSANIVVRPLWRTEQMLVG
HHHHHHHHCCCEEEEEEEHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHC
APSLLQQNAPPLAPDDLAGFDTLDTPSGDGRHVFNLIAPDGTRHTHEHEPRLVTADLMTI
CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHH
REAVLDGGGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVD
HHHHHCCCCCEECCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
YLVEKLDNERYEEPGCPERGAKDTQTKISI
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MWNWNDEMTIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLL
CCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
QRSTRKLALTEAGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
LLLEFLRRYPEVRVQIRVTNRVIDLFEDSIDVALRVRSEPPQSANIVVRPLWRTEQMLVG
HHHHHHHHCCCEEEEEEEHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHC
APSLLQQNAPPLAPDDLAGFDTLDTPSGDGRHVFNLIAPDGTRHTHEHEPRLVTADLMTI
CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHH
REAVLDGGGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVD
HHHHHCCCCCEECCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
YLVEKLDNERYEEPGCPERGAKDTQTKISI
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]