Click here to switch to the map view.

The map label for this gene is rarD [H]

Identifier: 126446382

GI number: 126446382

Start: 2174557

End: 2175450

Strand: Reverse

Name: rarD [H]

Synonym: BMA10247_A2234

Alternate gene names: 126446382

Gene position: 2175450-2174557 (Counterclockwise)

Preceding gene: 126447588

Following gene: 126447810

Centisome position: 92.47

GC content: 71.81

Gene sequence:

>894_bases
TTGACGGGCGCGGGTGACGATCCGCAGGCGGCGCGCGGGATCGCGCTGTCGGTCGCGGCATCGGCGCTGTTCGCGCTGCT
GTCCGCGTATGCGAAGCTGCTCGCGCCGCTGACGGGCCTCGACATTTTCGCGTGGCGGATCATATGGACCGCGCCCGGCG
CGCTCGCGGTCGTCGCGCTGCGCGGCCGCTGGCCCGCGTTGCGCGAGCTGCTCGCGCGCGCGTTCGCGAGCCGGCGGCTC
GCGCTGTCGCTCGCGGCGAGCGCGGGGTTGCTCGGCCTGCAGCTCTGGCTGTTCCTGTGGGCGCCGCTGCACGGCCGGAT
GCTCGAAGTGTCGCTCGGCTATTTCCTGCTGCCGCTGACGATGGTGCTCGTCGGGCGCTTCCACTATCACGAACGCCTGA
GCGCGCTGCAATGGCTGGCGCTCGCGTGCGCGGCGGCGGGCGTCGCGCACGAAATTTGGGCGACGCGCGCGTTCGCCTGG
CCGACGCTCGTCGTCGCGCTCGGCTATCCGCCTTACTTCGTGTTGAGACGCCGCGTGAACGCTGATTCGCTTGCGCTGTT
CTCGGTCGAGATGCTCGCGCTGCTGCCCATTGCGGCCGCGATGCTCGCGGCGGGCGGCACGAGCGTCGCCCGCCGGCCGC
TGTTGTGGGCGATGCTGCTGCCGGGCCTCGGCGCGATCAGCACGCTCGCGCTCGCGAGCTACCTGAAGGCGAGCCGCATG
CTGCCGATGGCGCTCTTCGGGATTCTCGGCTACGTCGAGCCGGTGCTGCTCGTCGCGGTGGCCGTGCTCGTGCTCGGCGA
GGCGCTGTCGTGGCAGCAGCTCGCGACGTATGCGCCGATCTGGGCGGCCGTCGCGCTGACCGCGTGGCACGGTTTTCTGA
TCGCGCGGCGATAG

Upstream 100 bases:

>100_bases
TGCTCGCGTGGCTGCGGCACGGCCCGCCCGCCGCGCACGTGACCGAGGTGACGTTCGAGGAGCACCGGACCGACAAGCGC
TTCGAGCGCTTCCAGCAGCA

Downstream 100 bases:

>100_bases
GCGCGCGGGCGCTCGACGGCACTCGGTTCCGCAGGCGCCGCATTCGCATGCGGGCTATCGGCGAACTTCGCCGGCGCGCC
GCGACGGGCGCGGCCGGCCT

Product: RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MTGAGDDPQAARGIALSVAASALFALLSAYAKLLAPLTGLDIFAWRIIWTAPGALAVVALRGRWPALRELLARAFASRRL
ALSLAASAGLLGLQLWLFLWAPLHGRMLEVSLGYFLLPLTMVLVGRFHYHERLSALQWLALACAAAGVAHEIWATRAFAW
PTLVVALGYPPYFVLRRRVNADSLALFSVEMLALLPIAAAMLAAGGTSVARRPLLWAMLLPGLGAISTLALASYLKASRM
LPMALFGILGYVEPVLLVAVAVLVLGEALSWQQLATYAPIWAAVALTAWHGFLIARR

Sequences:

>Translated_297_residues
MTGAGDDPQAARGIALSVAASALFALLSAYAKLLAPLTGLDIFAWRIIWTAPGALAVVALRGRWPALRELLARAFASRRL
ALSLAASAGLLGLQLWLFLWAPLHGRMLEVSLGYFLLPLTMVLVGRFHYHERLSALQWLALACAAAGVAHEIWATRAFAW
PTLVVALGYPPYFVLRRRVNADSLALFSVEMLALLPIAAAMLAAGGTSVARRPLLWAMLLPGLGAISTLALASYLKASRM
LPMALFGILGYVEPVLLVAVAVLVLGEALSWQQLATYAPIWAAVALTAWHGFLIARR
>Mature_296_residues
TGAGDDPQAARGIALSVAASALFALLSAYAKLLAPLTGLDIFAWRIIWTAPGALAVVALRGRWPALRELLARAFASRRLA
LSLAASAGLLGLQLWLFLWAPLHGRMLEVSLGYFLLPLTMVLVGRFHYHERLSALQWLALACAAAGVAHEIWATRAFAWP
TLVVALGYPPYFVLRRRVNADSLALFSVEMLALLPIAAAMLAAGGTSVARRPLLWAMLLPGLGAISTLALASYLKASRML
PMALFGILGYVEPVLLVAVAVLVLGEALSWQQLATYAPIWAAVALTAWHGFLIARR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=296, Percent_Identity=28.7162162162162, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31840; Mature: 31708

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGAGDDPQAARGIALSVAASALFALLSAYAKLLAPLTGLDIFAWRIIWTAPGALAVVAL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHEEEEC
RGRWPALRELLARAFASRRLALSLAASAGLLGLQLWLFLWAPLHGRMLEVSLGYFLLPLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
MVLVGRFHYHERLSALQWLALACAAAGVAHEIWATRAFAWPTLVVALGYPPYFVLRRRVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
ADSLALFSVEMLALLPIAAAMLAAGGTSVARRPLLWAMLLPGLGAISTLALASYLKASRM
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LPMALFGILGYVEPVLLVAVAVLVLGEALSWQQLATYAPIWAAVALTAWHGFLIARR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TGAGDDPQAARGIALSVAASALFALLSAYAKLLAPLTGLDIFAWRIIWTAPGALAVVAL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHEEEEC
RGRWPALRELLARAFASRRLALSLAASAGLLGLQLWLFLWAPLHGRMLEVSLGYFLLPLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
MVLVGRFHYHERLSALQWLALACAAAGVAHEIWATRAFAWPTLVVALGYPPYFVLRRRVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
ADSLALFSVEMLALLPIAAAMLAAGGTSVARRPLLWAMLLPGLGAISTLALASYLKASRM
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LPMALFGILGYVEPVLLVAVAVLVLGEALSWQQLATYAPIWAAVALTAWHGFLIARR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]