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The map label for this gene is dppB [H]

Identifier: 126446380

GI number: 126446380

Start: 984824

End: 985894

Strand: Reverse

Name: dppB [H]

Synonym: BMA10247_A1049

Alternate gene names: 126446380

Gene position: 985894-984824 (Counterclockwise)

Preceding gene: 126447823

Following gene: 126447051

Centisome position: 41.9

GC content: 69.84

Gene sequence:

>1071_bases
ATGTCGCTCCCCGCCCCTCCTCTCGAAACGCCGCGCACGCTGCCCGCGCGCCGGCCCGGCGTGCGCTGGGCGCTGCGCGC
GCTGCGCTGGACGCTCACGCTCGCCGTGACGTTCGCCGGGCTGCTCGCGCTCACGTTCGTGATCGGCCGCAAGGTGCCGA
TCGACCCGGTGCTCGCCGTGCTCGGCGACCGCGCGTCGGCCGCGGCCTATGCGGCCGAGCGCATCGCGCTCGGGCTCGAC
AAGCCGCTCGCGACGCAGTTCCTGATCTACGCGCGCGACGTGCTGCACGGCAATCTCGGCATGTCGCTGCTGACCTCGAA
CCCGGTGCTCGACGACATCAGGCGCGTGTTCCCCGCGACGCTCGAACTCGCGACGCTCGCGACGCTGATCGGCGTCGCGC
TCGGCGTGCCGCTCGGCGTCGCCGCGGCGGTGAAGCACAACCGGCCGATCGATCACGTCGCGCGCTTCGTCGGCCTGATC
GGCAACTCGGTGCCGGTGTTCTGGCTGGGACTGATGGGCCTTCTGCTGTTCTACGCGCGGCTGCACTGGGTCGCGGGGCC
CGGGCGGCTCGATCCCGTCTACGACGGGATGGTCGATCCGCGCACGGGCAGCCTGCTGCTCGACGCGGCGCTCGCGGGCG
AATGGGACGTGCTGCGCAACGCGCTGTCGCACATCGCGTTGCCCGCCGCGATCCTCGGCTACTACTCGGTCGCGTATCTG
AGCCGGATGACCCGCTCGTTCATGCTCGATCAACTGAACCAGGAATACATCGTCACCGCGCGCGCGAAGGGGCTCGCCGA
GCGCCGGGTGATCTGGCGGCACGCGTTCGGCAACATCGCGGTGCCGCTCCTCACCGTGATCGCGCTCACGTACAGCAACC
TGCTCGAAGGCTCGGTGCTGACCGAGATCGTGTTCGCGTGGCCCGGCATCGGCTCGTATCTGACGGGCGCACTGCTGAAC
GCCGACATGAACGCGGTGCTCGGCTGCACGCTCGTGATCGGCGTCATGTTCATCACGATCAATCTGCTGACCGACGCGCT
CTACCGCGTGTTCGATCCGCGCGCCCGCTGA

Upstream 100 bases:

>100_bases
CGACGCGGCCCGGCGTGAGCGGCCTCGAAGTCGGCCCGATCAACGATCTCGTTTCATATCGCAATCTGAAGAAGCAGTGA
AGCCGCTCCGGAACCCCGAC

Downstream 100 bases:

>100_bases
CCCGGCGCGCGCCGCGCCTGTTCGACCGAACTCATCAAGCCCATGAACGCCTCACCCGATCACTCCCGCCCGAATCCCGC
CGCGACGACGCTGCGCGCGT

Product: ABC transporter, permease protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MSLPAPPLETPRTLPARRPGVRWALRALRWTLTLAVTFAGLLALTFVIGRKVPIDPVLAVLGDRASAAAYAAERIALGLD
KPLATQFLIYARDVLHGNLGMSLLTSNPVLDDIRRVFPATLELATLATLIGVALGVPLGVAAAVKHNRPIDHVARFVGLI
GNSVPVFWLGLMGLLLFYARLHWVAGPGRLDPVYDGMVDPRTGSLLLDAALAGEWDVLRNALSHIALPAAILGYYSVAYL
SRMTRSFMLDQLNQEYIVTARAKGLAERRVIWRHAFGNIAVPLLTVIALTYSNLLEGSVLTEIVFAWPGIGSYLTGALLN
ADMNAVLGCTLVIGVMFITINLLTDALYRVFDPRAR

Sequences:

>Translated_356_residues
MSLPAPPLETPRTLPARRPGVRWALRALRWTLTLAVTFAGLLALTFVIGRKVPIDPVLAVLGDRASAAAYAAERIALGLD
KPLATQFLIYARDVLHGNLGMSLLTSNPVLDDIRRVFPATLELATLATLIGVALGVPLGVAAAVKHNRPIDHVARFVGLI
GNSVPVFWLGLMGLLLFYARLHWVAGPGRLDPVYDGMVDPRTGSLLLDAALAGEWDVLRNALSHIALPAAILGYYSVAYL
SRMTRSFMLDQLNQEYIVTARAKGLAERRVIWRHAFGNIAVPLLTVIALTYSNLLEGSVLTEIVFAWPGIGSYLTGALLN
ADMNAVLGCTLVIGVMFITINLLTDALYRVFDPRAR
>Mature_355_residues
SLPAPPLETPRTLPARRPGVRWALRALRWTLTLAVTFAGLLALTFVIGRKVPIDPVLAVLGDRASAAAYAAERIALGLDK
PLATQFLIYARDVLHGNLGMSLLTSNPVLDDIRRVFPATLELATLATLIGVALGVPLGVAAAVKHNRPIDHVARFVGLIG
NSVPVFWLGLMGLLLFYARLHWVAGPGRLDPVYDGMVDPRTGSLLLDAALAGEWDVLRNALSHIALPAAILGYYSVAYLS
RMTRSFMLDQLNQEYIVTARAKGLAERRVIWRHAFGNIAVPLLTVIALTYSNLLEGSVLTEIVFAWPGIGSYLTGALLNA
DMNAVLGCTLVIGVMFITINLLTDALYRVFDPRAR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=324, Percent_Identity=43.2098765432099, Blast_Score=238, Evalue=3e-64,
Organism=Escherichia coli, GI1787761, Length=333, Percent_Identity=43.8438438438438, Blast_Score=226, Evalue=1e-60,
Organism=Escherichia coli, GI1789888, Length=286, Percent_Identity=33.2167832167832, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=31.3099041533546, Blast_Score=154, Evalue=6e-39,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=29.9270072992701, Blast_Score=147, Evalue=7e-37,
Organism=Escherichia coli, GI1787497, Length=331, Percent_Identity=29.3051359516616, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI1788504, Length=280, Percent_Identity=27.5, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38560; Mature: 38429

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPAPPLETPRTLPARRPGVRWALRALRWTLTLAVTFAGLLALTFVIGRKVPIDPVLAV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LGDRASAAAYAAERIALGLDKPLATQFLIYARDVLHGNLGMSLLTSNPVLDDIRRVFPAT
HCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHH
LELATLATLIGVALGVPLGVAAAVKHNRPIDHVARFVGLIGNSVPVFWLGLMGLLLFYAR
HHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LHWVAGPGRLDPVYDGMVDPRTGSLLLDAALAGEWDVLRNALSHIALPAAILGYYSVAYL
HHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SRMTRSFMLDQLNQEYIVTARAKGLAERRVIWRHAFGNIAVPLLTVIALTYSNLLEGSVL
HHHHHHHHHHHCCHHHEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
TEIVFAWPGIGSYLTGALLNADMNAVLGCTLVIGVMFITINLLTDALYRVFDPRAR
HHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SLPAPPLETPRTLPARRPGVRWALRALRWTLTLAVTFAGLLALTFVIGRKVPIDPVLAV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LGDRASAAAYAAERIALGLDKPLATQFLIYARDVLHGNLGMSLLTSNPVLDDIRRVFPAT
HCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHH
LELATLATLIGVALGVPLGVAAAVKHNRPIDHVARFVGLIGNSVPVFWLGLMGLLLFYAR
HHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LHWVAGPGRLDPVYDGMVDPRTGSLLLDAALAGEWDVLRNALSHIALPAAILGYYSVAYL
HHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SRMTRSFMLDQLNQEYIVTARAKGLAERRVIWRHAFGNIAVPLLTVIALTYSNLLEGSVL
HHHHHHHHHHHCCHHHEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
TEIVFAWPGIGSYLTGALLNADMNAVLGCTLVIGVMFITINLLTDALYRVFDPRAR
HHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]