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The map label for this gene is ytcB [H]

Identifier: 126446174

GI number: 126446174

Start: 2194533

End: 2195579

Strand: Direct

Name: ytcB [H]

Synonym: BMA10247_A2263

Alternate gene names: 126446174

Gene position: 2194533-2195579 (Clockwise)

Preceding gene: 126447492

Following gene: 126446953

Centisome position: 93.28

GC content: 68.39

Gene sequence:

>1047_bases
ATGAAGGACCCCGAACGCAAGCGCATTCTCGTCACGGGCGGCGCCGGCTTTCTCGGCTCGCACCTGTGCGAGCGGCTCGT
CGCCGAAGGCCACGACGTGCTGTGCGTCGACAATTTCTACACCGGCGCGAAGGACAATATCGCGCATCTGCTCGACGCGC
CGAACTTCGAGCTGATGCGGCACGACGTGACGTTTCCGCTGTACGTCGAGGTCGACGAGATCTATAACCTCGCGTGCCCC
GCATCGCCCGTGCACTACCAGCGCGACCCGGTGCAGACGACGAAGACGAGCGTGCACGGCGCGATCAACATGCTCGGGCT
CGCGAAGCGCCTGAAGGCGCGCATCCTGCAGGCGTCGACGAGCGAAGTGTACGGCGACCCGGCGTCGCATCCGCAGCGCG
AGAGCTACTGGGGCCACGTGAATCCCGTCGGCATACGCGCGTGCTACGACGAGGGCAAGCGCTGCGCGGAGACGCTGTTC
GTCGACTATCACCGGCAATACGGCGTCGACATCCGCATCGCGCGGATCTTCAATACGTACGGCCCGCGCATGCATCCGGC
GGACGGGCGCGTCGTGTCGAACTTCATCATGCAGGCGCTCGCGGACGCGCCGCTCACCGTGTACGGCGACGGCCGGCAAA
CGCGTGCGTTCTGCTACGTCGACGACCTGATCGACGCGCTGATCCGCCTGATGGCCGCGCCCGGCCCGATGCCCGAGCCG
ATGAACCTCGGCAATGCCGAGGAAGTGTCGATGCTGCAGATCGCGCGCGAGGTGGTGCGCGTGACGGGCGCGTCGGTCGC
GATCGAATTCCGGCCGCTGCCCGCCGACGATCCGCGCCAGCGCTGCCCGGATCTCGGCTTCGCGCGCGAGCGGCTCGGCT
GGCGCGCGACCACGACGCTCGCCGACGGGCTCGCGGCAACGGTGCGCTACTTCATCCAGCGGCAGGCGGCGCATCACGCG
CCGGGCAACCTCGTGCACAGCACGCGGGTTGCGTCGCACATGCTCGCGCGCGTGAATGCGCAGGGGAGATCGCGCGTCAG
CGCGTAG

Upstream 100 bases:

>100_bases
CGTGCGCGCGGCGCGGCGCGCGCGCGGGCACGGCGGCGCACGTGCGGCGCTCGCCCGTCGCGCCCTCGGCAACGGTTGCG
AACCAGAAGGAGAACGGATC

Downstream 100 bases:

>100_bases
CGGGGGCGCGGGGCGCGCGGTTCGCGGCGGGTGGTTCGTGGTTCATGCCTCATAGCTCGCGGTACGCTGCGCTCGGGGCC
ATGCTCGAGACCCACACGGT

Product: NAD-dependent epimerase/dehydratase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MKDPERKRILVTGGAGFLGSHLCERLVAEGHDVLCVDNFYTGAKDNIAHLLDAPNFELMRHDVTFPLYVEVDEIYNLACP
ASPVHYQRDPVQTTKTSVHGAINMLGLAKRLKARILQASTSEVYGDPASHPQRESYWGHVNPVGIRACYDEGKRCAETLF
VDYHRQYGVDIRIARIFNTYGPRMHPADGRVVSNFIMQALADAPLTVYGDGRQTRAFCYVDDLIDALIRLMAAPGPMPEP
MNLGNAEEVSMLQIAREVVRVTGASVAIEFRPLPADDPRQRCPDLGFARERLGWRATTTLADGLAATVRYFIQRQAAHHA
PGNLVHSTRVASHMLARVNAQGRSRVSA

Sequences:

>Translated_348_residues
MKDPERKRILVTGGAGFLGSHLCERLVAEGHDVLCVDNFYTGAKDNIAHLLDAPNFELMRHDVTFPLYVEVDEIYNLACP
ASPVHYQRDPVQTTKTSVHGAINMLGLAKRLKARILQASTSEVYGDPASHPQRESYWGHVNPVGIRACYDEGKRCAETLF
VDYHRQYGVDIRIARIFNTYGPRMHPADGRVVSNFIMQALADAPLTVYGDGRQTRAFCYVDDLIDALIRLMAAPGPMPEP
MNLGNAEEVSMLQIAREVVRVTGASVAIEFRPLPADDPRQRCPDLGFARERLGWRATTTLADGLAATVRYFIQRQAAHHA
PGNLVHSTRVASHMLARVNAQGRSRVSA
>Mature_348_residues
MKDPERKRILVTGGAGFLGSHLCERLVAEGHDVLCVDNFYTGAKDNIAHLLDAPNFELMRHDVTFPLYVEVDEIYNLACP
ASPVHYQRDPVQTTKTSVHGAINMLGLAKRLKARILQASTSEVYGDPASHPQRESYWGHVNPVGIRACYDEGKRCAETLF
VDYHRQYGVDIRIARIFNTYGPRMHPADGRVVSNFIMQALADAPLTVYGDGRQTRAFCYVDDLIDALIRLMAAPGPMPEP
MNLGNAEEVSMLQIAREVVRVTGASVAIEFRPLPADDPRQRCPDLGFARERLGWRATTTLADGLAATVRYFIQRQAAHHA
PGNLVHSTRVASHMLARVNAQGRSRVSA

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family [H]

Homologues:

Organism=Homo sapiens, GI42516563, Length=311, Percent_Identity=55.9485530546624, Blast_Score=377, Evalue=1e-104,
Organism=Homo sapiens, GI7657641, Length=324, Percent_Identity=26.2345679012346, Blast_Score=104, Evalue=1e-22,
Organism=Escherichia coli, GI1788589, Length=341, Percent_Identity=24.3401759530792, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI48994969, Length=344, Percent_Identity=26.7441860465116, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1786974, Length=347, Percent_Identity=25.6484149855908, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788353, Length=337, Percent_Identity=24.6290801186944, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1788365, Length=219, Percent_Identity=27.3972602739726, Blast_Score=70, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17539532, Length=308, Percent_Identity=57.1428571428571, Blast_Score=369, Evalue=1e-102,
Organism=Caenorhabditis elegans, GI71982035, Length=332, Percent_Identity=27.4096385542169, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17568069, Length=343, Percent_Identity=26.530612244898, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115532424, Length=333, Percent_Identity=25.8258258258258, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI21356223, Length=306, Percent_Identity=55.8823529411765, Blast_Score=366, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 38586; Mature: 38586

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDPERKRILVTGGAGFLGSHLCERLVAEGHDVLCVDNFYTGAKDNIAHLLDAPNFELMR
CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHCCCCHHHHH
HDVTFPLYVEVDEIYNLACPASPVHYQRDPVQTTKTSVHGAINMLGLAKRLKARILQAST
HCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEVYGDPASHPQRESYWGHVNPVGIRACYDEGKRCAETLFVDYHRQYGVDIRIARIFNTY
HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHC
GPRMHPADGRVVSNFIMQALADAPLTVYGDGRQTRAFCYVDDLIDALIRLMAAPGPMPEP
CCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHCCCCCCCC
MNLGNAEEVSMLQIAREVVRVTGASVAIEFRPLPADDPRQRCPDLGFARERLGWRATTTL
CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHCCCCCHHHHHCCCCHHHHH
ADGLAATVRYFIQRQAAHHAPGNLVHSTRVASHMLARVNAQGRSRVSA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKDPERKRILVTGGAGFLGSHLCERLVAEGHDVLCVDNFYTGAKDNIAHLLDAPNFELMR
CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHCCCCHHHHH
HDVTFPLYVEVDEIYNLACPASPVHYQRDPVQTTKTSVHGAINMLGLAKRLKARILQAST
HCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEVYGDPASHPQRESYWGHVNPVGIRACYDEGKRCAETLFVDYHRQYGVDIRIARIFNTY
HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHC
GPRMHPADGRVVSNFIMQALADAPLTVYGDGRQTRAFCYVDDLIDALIRLMAAPGPMPEP
CCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHCCCCCCCC
MNLGNAEEVSMLQIAREVVRVTGASVAIEFRPLPADDPRQRCPDLGFARERLGWRATTTL
CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHCCCCCHHHHHCCCCHHHHH
ADGLAATVRYFIQRQAAHHAPGNLVHSTRVASHMLARVNAQGRSRVSA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]