| Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
|---|---|
| Accession | NC_009079 |
| Length | 2,352,693 |
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The map label for this gene is yhdF [H]
Identifier: 126446152
GI number: 126446152
Start: 2189033
End: 2189890
Strand: Reverse
Name: yhdF [H]
Synonym: BMA10247_A2253
Alternate gene names: 126446152
Gene position: 2189890-2189033 (Counterclockwise)
Preceding gene: 126446695
Following gene: 126445797
Centisome position: 93.08
GC content: 69.46
Gene sequence:
>858_bases ATGAGCACCGCTGAAGCTTCATCGCCGCAAGGCCGCACGCCGCAACCGGGCCGCGAGCGCGAGATGGCGGCGAAGCCGCG CGACGAGGCCGCCGGCTACGTCGGCAGCGGCCGCCTCGACGGCAAGGTCGCGCTCGTGACGGGCGGCGACAGCGGCATCG GGCGCGCGGTCGCGGTCGGCTTCGCGAAGGAAGGCGCGGACGTCGCGATCGTCTATCTGAACGAATCGGACGACGCCGCG CACACGAAGCACCTGATCGAGCAGACGGGCCGGCGCTGCGAGACGATCGCGCTCGACATCGGCGAGCGCGCGAACGCGCA CGTCGCGCTCAGGCGCGCCGTCGAGCGCTTCGGCCGCCTCGACGTGCTCGTGAACAACGCGGGCGAGCAGCACGTGCAGA CCGACATCGGGCAGATCAGCGAAGCGCAGCTCACGCACACGTTTCGCACCAATATCTTCGCGATGTTCTTCTGCACGCAG GCGGCGCTCACGCACATGAAGGCGGGCGCGCGCATCGTCAACACGGCGTCCGTCACCGCGTACCACGGCAATCCGGTGCT CATCGACTACTCGGCGACGAAGGGCGCGATCGTATCGTTCACACGCTCGCTCGCGCTCAATCTCGCGAGCCGCGGCATTC ACGTGAACGCGGTCGCGCCGGGGCCGATCTGGACGCCGTTGATCCAGTCGACGTTCGACGACGAGCAGCGCGCGCGCTTC GGCGCCAACGTGCCGCTCAAGCGGCCCGGCCAGCCGGACGAGCTGATCGGCTGTTACGTGCTGCTCGCGTCGGACGGCGC GGACTACATGACGGGCCAGACGCTGCACCCGAACGGCGGGACGATCGTCAACGGCTGA
Upstream 100 bases:
>100_bases CGCACCGGCGGGCAAGCCGCGTGCGAGGCACGGGCCGGCGGCCCGCCGTCGGCGCATCGCTGCATCGACGCATCATCGCA TCGTGAACAAGGAGAACGCC
Downstream 100 bases:
>100_bases CGGCCGGGGGCGGCGCTTCTTTTACAGGAGGTCACCGATGAAAACGCGCAGATGGATCATCGCGGGCGCCGCGTGCGCGG CGCTCGGCGCGCCGGCGCTG
Product: short chain dehydrogenase/reductase family oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MSTAEASSPQGRTPQPGREREMAAKPRDEAAGYVGSGRLDGKVALVTGGDSGIGRAVAVGFAKEGADVAIVYLNESDDAA HTKHLIEQTGRRCETIALDIGERANAHVALRRAVERFGRLDVLVNNAGEQHVQTDIGQISEAQLTHTFRTNIFAMFFCTQ AALTHMKAGARIVNTASVTAYHGNPVLIDYSATKGAIVSFTRSLALNLASRGIHVNAVAPGPIWTPLIQSTFDDEQRARF GANVPLKRPGQPDELIGCYVLLASDGADYMTGQTLHPNGGTIVNG
Sequences:
>Translated_285_residues MSTAEASSPQGRTPQPGREREMAAKPRDEAAGYVGSGRLDGKVALVTGGDSGIGRAVAVGFAKEGADVAIVYLNESDDAA HTKHLIEQTGRRCETIALDIGERANAHVALRRAVERFGRLDVLVNNAGEQHVQTDIGQISEAQLTHTFRTNIFAMFFCTQ AALTHMKAGARIVNTASVTAYHGNPVLIDYSATKGAIVSFTRSLALNLASRGIHVNAVAPGPIWTPLIQSTFDDEQRARF GANVPLKRPGQPDELIGCYVLLASDGADYMTGQTLHPNGGTIVNG >Mature_284_residues STAEASSPQGRTPQPGREREMAAKPRDEAAGYVGSGRLDGKVALVTGGDSGIGRAVAVGFAKEGADVAIVYLNESDDAAH TKHLIEQTGRRCETIALDIGERANAHVALRRAVERFGRLDVLVNNAGEQHVQTDIGQISEAQLTHTFRTNIFAMFFCTQA ALTHMKAGARIVNTASVTAYHGNPVLIDYSATKGAIVSFTRSLALNLASRGIHVNAVAPGPIWTPLIQSTFDDEQRARFG ANVPLKRPGQPDELIGCYVLLASDGADYMTGQTLHPNGGTIVNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=258, Percent_Identity=29.0697674418605, Blast_Score=105, Evalue=5e-23, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=29.9610894941634, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI59889578, Length=226, Percent_Identity=31.4159292035398, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI31542939, Length=213, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=30.7053941908714, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI4758504, Length=233, Percent_Identity=33.9055793991416, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=30.7086614173228, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=29.2490118577075, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI66933014, Length=256, Percent_Identity=32.03125, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI4504505, Length=190, Percent_Identity=32.1052631578947, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=29.6, Blast_Score=86, Evalue=6e-17, Organism=Homo sapiens, GI10190704, Length=255, Percent_Identity=29.0196078431373, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=30.5882352941176, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI142976729, Length=204, Percent_Identity=27.9411764705882, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI210032110, Length=192, Percent_Identity=29.1666666666667, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI83715985, Length=233, Percent_Identity=31.7596566523605, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI224922801, Length=184, Percent_Identity=33.1521739130435, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI7706318, Length=229, Percent_Identity=26.2008733624454, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI33667109, Length=217, Percent_Identity=29.9539170506912, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI146231950, Length=207, Percent_Identity=32.3671497584541, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1789378, Length=267, Percent_Identity=43.8202247191011, Blast_Score=221, Evalue=5e-59, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=36.2903225806452, Blast_Score=141, Evalue=4e-35, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=34.2857142857143, Blast_Score=138, Evalue=5e-34, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=36.3265306122449, Blast_Score=137, Evalue=8e-34, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=36.8852459016393, Blast_Score=135, Evalue=2e-33, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=33.7254901960784, Blast_Score=121, Evalue=5e-29, Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=32.6612903225806, Blast_Score=117, Evalue=8e-28, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=30.3643724696356, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=31.7269076305221, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=32.7868852459016, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=31.5175097276265, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789057, Length=263, Percent_Identity=30.7984790874525, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=27.3092369477912, Blast_Score=73, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=32.1138211382114, Blast_Score=117, Evalue=9e-27, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=32, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=31.8352059925094, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=32.2097378277154, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=33.4600760456274, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=31.8352059925094, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=32.1428571428571, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=30.4511278195489, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=31.0606060606061, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=31.4393939393939, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=34.4, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17538480, Length=274, Percent_Identity=30.6569343065693, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=31.1538461538462, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=29.9610894941634, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=30.2681992337165, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=29.0076335877863, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=31.6793893129771, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=30.5343511450382, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=30.6818181818182, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=28.6821705426357, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=31.7073170731707, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=29.6577946768061, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=29.3233082706767, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=28.0487804878049, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=26.7924528301887, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17565030, Length=266, Percent_Identity=30.4511278195489, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=32.2834645669291, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=28.1124497991968, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17561272, Length=257, Percent_Identity=30.7392996108949, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17564282, Length=189, Percent_Identity=30.6878306878307, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17568967, Length=200, Percent_Identity=28.5, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI193203117, Length=214, Percent_Identity=28.5046728971963, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI193203115, Length=220, Percent_Identity=28.1818181818182, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=28.7179487179487, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71982365, Length=215, Percent_Identity=25.5813953488372, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=200, Percent_Identity=30.5, Blast_Score=77, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6324126, Length=254, Percent_Identity=26.3779527559055, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6322861, Length=194, Percent_Identity=27.319587628866, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=33.739837398374, Blast_Score=111, Evalue=5e-25, Organism=Drosophila melanogaster, GI21357041, Length=245, Percent_Identity=32.6530612244898, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI28571526, Length=245, Percent_Identity=33.469387755102, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=27.9352226720648, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=31.4516129032258, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=29.8387096774194, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24644337, Length=261, Percent_Identity=37.1647509578544, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=31.5789473684211, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI17737361, Length=228, Percent_Identity=32.4561403508772, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI18859837, Length=193, Percent_Identity=29.5336787564767, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24581726, Length=190, Percent_Identity=29.4736842105263, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI161076933, Length=200, Percent_Identity=27.5, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24584748, Length=200, Percent_Identity=27.5, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24580925, Length=227, Percent_Identity=26.8722466960352, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI281364892, Length=172, Percent_Identity=27.906976744186, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 30245; Mature: 30114
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTAEASSPQGRTPQPGREREMAAKPRDEAAGYVGSGRLDGKVALVTGGDSGIGRAVAVG CCCCCCCCCCCCCCCCCCCHHHHCCCCHHHCCCCCCCCCCCEEEEEECCCCCCCCEEEEE FAKEGADVAIVYLNESDDAAHTKHLIEQTGRRCETIALDIGERANAHVALRRAVERFGRL EECCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCE DVLVNNAGEQHVQTDIGQISEAQLTHTFRTNIFAMFFCTQAALTHMKAGARIVNTASVTA EEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE YHGNPVLIDYSATKGAIVSFTRSLALNLASRGIHVNAVAPGPIWTPLIQSTFDDEQRARF ECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCHHHHHHH GANVPLKRPGQPDELIGCYVLLASDGADYMTGQTLHPNGGTIVNG CCCCCCCCCCCCHHHEEEEEEEECCCCCCCCCCEECCCCCEEECC >Mature Secondary Structure STAEASSPQGRTPQPGREREMAAKPRDEAAGYVGSGRLDGKVALVTGGDSGIGRAVAVG CCCCCCCCCCCCCCCCCCHHHHCCCCHHHCCCCCCCCCCCEEEEEECCCCCCCCEEEEE FAKEGADVAIVYLNESDDAAHTKHLIEQTGRRCETIALDIGERANAHVALRRAVERFGRL EECCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCE DVLVNNAGEQHVQTDIGQISEAQLTHTFRTNIFAMFFCTQAALTHMKAGARIVNTASVTA EEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE YHGNPVLIDYSATKGAIVSFTRSLALNLASRGIHVNAVAPGPIWTPLIQSTFDDEQRARF ECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCHHHHHHH GANVPLKRPGQPDELIGCYVLLASDGADYMTGQTLHPNGGTIVNG CCCCCCCCCCCCHHHEEEEEEEECCCCCCCCCCEECCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]