Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is yfhM [H]
Identifier: 126446055
GI number: 126446055
Start: 968434
End: 969324
Strand: Reverse
Name: yfhM [H]
Synonym: BMA10247_A1026
Alternate gene names: 126446055
Gene position: 969324-968434 (Counterclockwise)
Preceding gene: 126446729
Following gene: 126446215
Centisome position: 41.2
GC content: 72.39
Gene sequence:
>891_bases TTGGATGAAGCGCGCCGCGTCACCTCGTTCCACCACGATGGATTGACTTTCGACGCCGTCGATACGGGCCCGCTCGACGG CGAGGTCATCGTGCTGCTGCACGGCTGGCCGCAGACGGCGAAGTGCTGGGCGCGCGTCGCGGCGCGGCTGAATGCCGACG GCTATCGCACGGTCGCGCCGAACCAGCGCGGCTACTCGCCGCTCGCCCGCCCCCGCCGCGTCGGCGCGTACCGGATGCCG CATCTCGTCGGCGACGTCGTCGCGCTGATCGAGCGGCTCGGCGGCGGCCCGGTCCACGTCGTCGGGCACGACTGGGGCGC CGCGGTCGCATGGGCGCTCGCGGGCCGGCATCCCGCCGCGGTGCGCACGTTGACGACGGTGTCGGTGCCGCACTCGGGCG CGTTCATGCGCTCGATGCTCAGCAGCGACCAGTTGTTCCGCTCGTACTATATGGGCCTCTTCCAGTTGCCGAAGCTGCCG GAGCTGTTCGTCACGCGCTGCCGCGGGCTGTTCGAGAAAATGCTCACGGGCACGGGCATGACGCGCGACGAGGTGGACAC CGTCTACGCCGACATCGTCGAGGCAGGCGCGCTGACGACGTCGCTCAACTGGTATCGCGCGATGATGTTGACGCCGCCCG GCTATCTGACCCGCAAGGTGCCCGTGCCCGTCCTGCACGTGTGGGGCGCGCGGGACGCGGCGCTGTCGCGGCGCGGCGCC GAGCTCGCGCGCGAGTTCGCGAGCGGCCCGTACCGGCTCGAGGTGCTGCCGCACGCGACGCACTGGATTCCCGAGCACGA CGCCGAGCGGCTCGCCGCGCTCGTGCGCGAATCGATCGCGGTGAAGCCGGGCGCGGCGCCCGGCCCGCTCGCGGCGGCCG CCGCGAACTGA
Upstream 100 bases:
>100_bases GCGCCGCCCGTCGGCTGCCGGCCGAAGCATCTGCGCCGCCGAGCGCGCCGCGGGCATGCGCGAGACGCGCGATCGAAGCA GGAAATCAGGAGAACCGACC
Downstream 100 bases:
>100_bases TCGACGCCTGCCCGCGCTCCCGCCGCACGCCGGCCCGCCGCGCGGCGGCGCGCTCAGTCCGCGAGTTCGATGCCCGCGCG CTCCATCGCGCGCGTCGACT
Product: alpha/beta fold family hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 296; Mature: 296
Protein sequence:
>296_residues MDEARRVTSFHHDGLTFDAVDTGPLDGEVIVLLHGWPQTAKCWARVAARLNADGYRTVAPNQRGYSPLARPRRVGAYRMP HLVGDVVALIERLGGGPVHVVGHDWGAAVAWALAGRHPAAVRTLTTVSVPHSGAFMRSMLSSDQLFRSYYMGLFQLPKLP ELFVTRCRGLFEKMLTGTGMTRDEVDTVYADIVEAGALTTSLNWYRAMMLTPPGYLTRKVPVPVLHVWGARDAALSRRGA ELAREFASGPYRLEVLPHATHWIPEHDAERLAALVRESIAVKPGAAPGPLAAAAAN
Sequences:
>Translated_296_residues MDEARRVTSFHHDGLTFDAVDTGPLDGEVIVLLHGWPQTAKCWARVAARLNADGYRTVAPNQRGYSPLARPRRVGAYRMP HLVGDVVALIERLGGGPVHVVGHDWGAAVAWALAGRHPAAVRTLTTVSVPHSGAFMRSMLSSDQLFRSYYMGLFQLPKLP ELFVTRCRGLFEKMLTGTGMTRDEVDTVYADIVEAGALTTSLNWYRAMMLTPPGYLTRKVPVPVLHVWGARDAALSRRGA ELAREFASGPYRLEVLPHATHWIPEHDAERLAALVRESIAVKPGAAPGPLAAAAAN >Mature_296_residues MDEARRVTSFHHDGLTFDAVDTGPLDGEVIVLLHGWPQTAKCWARVAARLNADGYRTVAPNQRGYSPLARPRRVGAYRMP HLVGDVVALIERLGGGPVHVVGHDWGAAVAWALAGRHPAAVRTLTTVSVPHSGAFMRSMLSSDQLFRSYYMGLFQLPKLP ELFVTRCRGLFEKMLTGTGMTRDEVDTVYADIVEAGALTTSLNWYRAMMLTPPGYLTRKVPVPVLHVWGARDAALSRRGA ELAREFASGPYRLEVLPHATHWIPEHDAERLAALVRESIAVKPGAAPGPLAAAAAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. Epoxide hydrolase family [H]
Homologues:
Organism=Homo sapiens, GI218777837, Length=273, Percent_Identity=28.9377289377289, Blast_Score=127, Evalue=9e-30, Organism=Homo sapiens, GI218777840, Length=267, Percent_Identity=31.8352059925094, Blast_Score=121, Evalue=8e-28, Organism=Homo sapiens, GI13376164, Length=267, Percent_Identity=31.8352059925094, Blast_Score=121, Evalue=8e-28, Organism=Homo sapiens, GI27597073, Length=244, Percent_Identity=25, Blast_Score=72, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17562298, Length=281, Percent_Identity=30.2491103202847, Blast_Score=131, Evalue=4e-31, Organism=Caenorhabditis elegans, GI17554012, Length=275, Percent_Identity=27.6363636363636, Blast_Score=124, Evalue=6e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR000639 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: NA
Molecular weight: Translated: 32268; Mature: 32268
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDEARRVTSFHHDGLTFDAVDTGPLDGEVIVLLHGWPQTAKCWARVAARLNADGYRTVAP CCCHHHHHHHCCCCCEEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEECC NQRGYSPLARPRRVGAYRMPHLVGDVVALIERLGGGPVHVVGHDWGAAVAWALAGRHPAA CCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCHH VRTLTTVSVPHSGAFMRSMLSSDQLFRSYYMGLFQLPKLPELFVTRCRGLFEKMLTGTGM HEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC TRDEVDTVYADIVEAGALTTSLNWYRAMMLTPPGYLTRKVPVPVLHVWGARDAALSRRGA CHHHHHHHHHHHHHHCCHHEEHHHHEEEEECCCCCCEECCCCCEEEECCCCHHHHHHHHH ELAREFASGPYRLEVLPHATHWIPEHDAERLAALVRESIAVKPGAAPGPLAAAAAN HHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHCCCC >Mature Secondary Structure MDEARRVTSFHHDGLTFDAVDTGPLDGEVIVLLHGWPQTAKCWARVAARLNADGYRTVAP CCCHHHHHHHCCCCCEEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEECC NQRGYSPLARPRRVGAYRMPHLVGDVVALIERLGGGPVHVVGHDWGAAVAWALAGRHPAA CCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCHH VRTLTTVSVPHSGAFMRSMLSSDQLFRSYYMGLFQLPKLPELFVTRCRGLFEKMLTGTGM HEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC TRDEVDTVYADIVEAGALTTSLNWYRAMMLTPPGYLTRKVPVPVLHVWGARDAALSRRGA CHHHHHHHHHHHHHHCCHHEEHHHHEEEEECCCCCCEECCCCCEEEECCCCHHHHHHHHH ELAREFASGPYRLEVLPHATHWIPEHDAERLAALVRESIAVKPGAAPGPLAAAAAN HHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8946165; 9384377 [H]