Click here to switch to the map view.

The map label for this gene is 126445995

Identifier: 126445995

GI number: 126445995

Start: 917063

End: 918256

Strand: Reverse

Name: 126445995

Synonym: BMA10247_A0969

Alternate gene names: NA

Gene position: 918256-917063 (Counterclockwise)

Preceding gene: 126446682

Following gene: 126445716

Centisome position: 39.03

GC content: 65.83

Gene sequence:

>1194_bases
ATGGAACACAAGAAAGCCAAAAACTCAGCCGTGGGAACGCGCGTGGCCGATCGTTTCGCGCGCGGCCACCGCCCGCGTCA
TTTGGAGCAAAGGTCAGGAGATCAGATGGTCAAGCATGCGGCAGCAACATTACTCGGCGCGCTCGCCGTCGCCGGCGCGT
GGGCGCAGAGCAGCGTCACGCTGTACGGCAGCCTCGACGCCGGCGTCGCGTACGTGAACAACGTCGGCGGCGGCGCGAAG
TGGTCGATGATTCAGGGCAACACGCAGCCCGATCGATGGGGGCTGAAGGGCGTCGAGGATCTGGGCGGCGGTCTGAAGGC
GATCTTCCAGCTCGAAAACGGCTTCTATACGAACAACGGCCAGATGGCGGCGGCGGGCACGATGTGGAACCGTCAGGCGT
TCGTCGGCCTGAATTCCGACCGGCTCGGCGCGCTGACGCTCGGCCACCAGACGCCGTTCAACTTCGACTGGCTCGACCCG
CTGTCGAGCGCATTCCTCGCGCAGAGCTGGTATGCGTTCCATCCCGGCAACCTCGACCAGCTCGCGGACACCAGCACCGT
GCCGTTCAACAACTCGGTCAAGTACCGGTCACCCGTCTTTGCGGGCTTCACGGTGGGCGCGATGCTCGGCTTCGGCAACA
CGACGAACTTCTCGACCGGCCGCACGATGAGCTTCGGCGTGAACTACGCGAACGGCCCGTTCAAGGCGGCCGCCGTCTAT
TCGAACGAGCACGACCAGGCGTTCCCGATGGCGACCGTCGGCGGCATCGCCGGGCCGGGCGGCACGTTCCAGGGCATGCC
CGTCGCGAGCTATGTCGCGAAGAAGGCGCAGAACATGGGCGCGGGCCTGTCGTACCGCTTCGGCCCGCTGCTCGTGCACG
GCCTTTACACGCGCGTGAAACTGCAGGCGAACGGCCACTCGGATACGTTCCAGAGCTACGACGCCGGCGCGAACTACCAG
AGCTCGCCGTTCAACGTGATCGCGGGCGGCGCGGCGACTTCGACGCTCGCCGGCCGCCGCTGGAGCCAGTTCGAGCTCGG
CGACACGTATTCGCTGTCCAAGCGCACGCAGCTCTACGTGAACGTGCTGTACGAGCACGCGAGCGGCAACGCGAAGGCCG
CGTTCTTCACGGCGGGCGCGTCGAGCACGGCGAATCAGGTGATTGTCCTGACGGGGATTCACCACTCGTTCTGA

Upstream 100 bases:

>100_bases
TCGGACGAATCGCGGCCGCCGCTTCGATTCGAAAATTTATTTTGTTTCCGCTGATTTCCGCCCCTATACTCCATTCCACT
AAAGGCACACAGTTCCATAT

Downstream 100 bases:

>100_bases
GCGCGGCGCATCGTTTCGCACACGCGCGGCGGTGGCGACGGCGCGTGCCGAGCGGCGCTCGCAAGCGACGTGGCGTTTCT
TCGGCGCGCATCGCGGCGAT

Product: putative outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MEHKKAKNSAVGTRVADRFARGHRPRHLEQRSGDQMVKHAAATLLGALAVAGAWAQSSVTLYGSLDAGVAYVNNVGGGAK
WSMIQGNTQPDRWGLKGVEDLGGGLKAIFQLENGFYTNNGQMAAAGTMWNRQAFVGLNSDRLGALTLGHQTPFNFDWLDP
LSSAFLAQSWYAFHPGNLDQLADTSTVPFNNSVKYRSPVFAGFTVGAMLGFGNTTNFSTGRTMSFGVNYANGPFKAAAVY
SNEHDQAFPMATVGGIAGPGGTFQGMPVASYVAKKAQNMGAGLSYRFGPLLVHGLYTRVKLQANGHSDTFQSYDAGANYQ
SSPFNVIAGGAATSTLAGRRWSQFELGDTYSLSKRTQLYVNVLYEHASGNAKAAFFTAGASSTANQVIVLTGIHHSF

Sequences:

>Translated_397_residues
MEHKKAKNSAVGTRVADRFARGHRPRHLEQRSGDQMVKHAAATLLGALAVAGAWAQSSVTLYGSLDAGVAYVNNVGGGAK
WSMIQGNTQPDRWGLKGVEDLGGGLKAIFQLENGFYTNNGQMAAAGTMWNRQAFVGLNSDRLGALTLGHQTPFNFDWLDP
LSSAFLAQSWYAFHPGNLDQLADTSTVPFNNSVKYRSPVFAGFTVGAMLGFGNTTNFSTGRTMSFGVNYANGPFKAAAVY
SNEHDQAFPMATVGGIAGPGGTFQGMPVASYVAKKAQNMGAGLSYRFGPLLVHGLYTRVKLQANGHSDTFQSYDAGANYQ
SSPFNVIAGGAATSTLAGRRWSQFELGDTYSLSKRTQLYVNVLYEHASGNAKAAFFTAGASSTANQVIVLTGIHHSF
>Mature_397_residues
MEHKKAKNSAVGTRVADRFARGHRPRHLEQRSGDQMVKHAAATLLGALAVAGAWAQSSVTLYGSLDAGVAYVNNVGGGAK
WSMIQGNTQPDRWGLKGVEDLGGGLKAIFQLENGFYTNNGQMAAAGTMWNRQAFVGLNSDRLGALTLGHQTPFNFDWLDP
LSSAFLAQSWYAFHPGNLDQLADTSTVPFNNSVKYRSPVFAGFTVGAMLGFGNTTNFSTGRTMSFGVNYANGPFKAAAVY
SNEHDQAFPMATVGGIAGPGGTFQGMPVASYVAKKAQNMGAGLSYRFGPLLVHGLYTRVKLQANGHSDTFQSYDAGANYQ
SSPFNVIAGGAATSTLAGRRWSQFELGDTYSLSKRTQLYVNVLYEHASGNAKAAFFTAGASSTANQVIVLTGIHHSF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 42243; Mature: 42243

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHKKAKNSAVGTRVADRFARGHRPRHLEQRSGDQMVKHAAATLLGALAVAGAWAQSSVT
CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEE
LYGSLDAGVAYVNNVGGGAKWSMIQGNTQPDRWGLKGVEDLGGGLKAIFQLENGFYTNNG
EEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHCCHHEEEEEECCCEEECCC
QMAAAGTMWNRQAFVGLNSDRLGALTLGHQTPFNFDWLDPLSSAFLAQSWYAFHPGNLDQ
CEEEECCCCCCEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCEEECCCCHHH
LADTSTVPFNNSVKYRSPVFAGFTVGAMLGFGNTTNFSTGRTMSFGVNYANGPFKAAAVY
HCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCEEEEEEE
SNEHDQAFPMATVGGIAGPGGTFQGMPVASYVAKKAQNMGAGLSYRFGPLLVHGLYTRVK
CCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHEEEEEEEE
LQANGHSDTFQSYDAGANYQSSPFNVIAGGAATSTLAGRRWSQFELGDTYSLSKRTQLYV
EEECCCCCHHHCCCCCCCCCCCCCEEEECCCHHHHHCCCCCCEEECCCCCCCCHHHEEEE
NVLYEHASGNAKAAFFTAGASSTANQVIVLTGIHHSF
EEEEECCCCCCEEEEEECCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MEHKKAKNSAVGTRVADRFARGHRPRHLEQRSGDQMVKHAAATLLGALAVAGAWAQSSVT
CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEE
LYGSLDAGVAYVNNVGGGAKWSMIQGNTQPDRWGLKGVEDLGGGLKAIFQLENGFYTNNG
EEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHCCHHEEEEEECCCEEECCC
QMAAAGTMWNRQAFVGLNSDRLGALTLGHQTPFNFDWLDPLSSAFLAQSWYAFHPGNLDQ
CEEEECCCCCCEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCEEECCCCHHH
LADTSTVPFNNSVKYRSPVFAGFTVGAMLGFGNTTNFSTGRTMSFGVNYANGPFKAAAVY
HCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCEEEEEEE
SNEHDQAFPMATVGGIAGPGGTFQGMPVASYVAKKAQNMGAGLSYRFGPLLVHGLYTRVK
CCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHEEEEEEEE
LQANGHSDTFQSYDAGANYQSSPFNVIAGGAATSTLAGRRWSQFELGDTYSLSKRTQLYV
EEECCCCCHHHCCCCCCCCCCCCCEEEECCCHHHHHCCCCCCEEECCCCCCCCHHHEEEE
NVLYEHASGNAKAAFFTAGASSTANQVIVLTGIHHSF
EEEEECCCCCCEEEEEECCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]