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The map label for this gene is nlpD [H]

Identifier: 126445922

GI number: 126445922

Start: 977273

End: 978241

Strand: Direct

Name: nlpD [H]

Synonym: BMA10247_A1039

Alternate gene names: 126445922

Gene position: 977273-978241 (Clockwise)

Preceding gene: 126446322

Following gene: 126446647

Centisome position: 41.54

GC content: 73.17

Gene sequence:

>969_bases
ATGACCGGAGTTGTCTCGAGCATGAGCAAGAGCGAGATCGACCGCAGTGTCGCATGGTTGTCCGGCGTGGCGGCCGCGTT
CGTCGTCGCGGGCTGCGCAACCACGTCGCCCGTCACGCCGACTGATACGCTCGCGGCCGCCGCGTCTTCGGCGAGCGCCG
CGCAGCCCGCGGCCGCGCCGCCGGGCGACGCGGCGCAGCATCCGGAGCACGCCGCCGCGCCGGCGCCGATCGCGACACGC
TACGTCGTGAGGCGCGGCGATACGCTGTCGGCGATCGCGCAAGCGAACGGCTGCACCGTGCGCGAGCTGCAGGCCTGGAA
CCGGATGGGCCGGCGCACCCGGATCGGCATCGGCCAGGTATTGCGGATCGCGCCGCCGGGTGCGGAAAACGCGGTCGCCT
CCGAGGCGGCGGATGGCGCGGGCGCGACCCGCGCGGCCGGCAATGCAGCCGGCGCCGCGCGCGCGGCCGATCCGGCGAGC
GGCGCGGGCGGGGCGCTTGTCGCCGATGCGCCGCAGCCTGCATCGGCGCCCGAAAGCGCCGCGGACCGGGCGGCGGACCA
TCGGGTCGTCCAGGAAACGAAGCGGCACGCGCAATCGATCGCGCTCGCGTGGCCGGCGAAGGGCGCGGTCGTCGAAACGT
TCCAGCCCGGCCGCAATCGCGGCATCCGGATCGTCGGGCGCGCGGGCGATCCGGTGCGTGCCGCGGCGTCCGGCCGGGTG
ATGTACGCGGGCACGGGCCTGAACGGGTACGGCACGCTGATCCTGGTCCAGCACAACGCGGATTTTCTGACCGCTTACGC
GCACAACCGCAAGGTGCTCGTGAAGACGGGCGACGTCGTTCAGCAGGGCGAACAGATCGCCGAGATGGGCACCGGCGACA
GCACACGCGCCGGAATGCTGTTCGAGGTGCGGCGCGACGGCAAGCCCGTCAATCCGATGCCGTATCTGGCGAGCCGGCAG
CAGGGTTAG

Upstream 100 bases:

>100_bases
ATTCGATTTCGCCCCTCGCGATGCCCGCTGCGATTTTGTCATCATTCTTGCATCCGGTTACACGCGCTCCGGATGAATTT
TGAGATGCTCGAAAAATTCT

Downstream 100 bases:

>100_bases
CGGCGTGCCCGCCGCGCGCGAACGGCCGGCCGCCGCGCGGCACGCTTGCGCCGGTCGCCACAAATTCGCACGCACTCCTG
TGACGAGAGCTGATACGCTA

Product: putative peptidoglycan-binding LysM/M23B peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MTGVVSSMSKSEIDRSVAWLSGVAAAFVVAGCATTSPVTPTDTLAAAASSASAAQPAAAPPGDAAQHPEHAAAPAPIATR
YVVRRGDTLSAIAQANGCTVRELQAWNRMGRRTRIGIGQVLRIAPPGAENAVASEAADGAGATRAAGNAAGAARAADPAS
GAGGALVADAPQPASAPESAADRAADHRVVQETKRHAQSIALAWPAKGAVVETFQPGRNRGIRIVGRAGDPVRAAASGRV
MYAGTGLNGYGTLILVQHNADFLTAYAHNRKVLVKTGDVVQQGEQIAEMGTGDSTRAGMLFEVRRDGKPVNPMPYLASRQ
QG

Sequences:

>Translated_322_residues
MTGVVSSMSKSEIDRSVAWLSGVAAAFVVAGCATTSPVTPTDTLAAAASSASAAQPAAAPPGDAAQHPEHAAAPAPIATR
YVVRRGDTLSAIAQANGCTVRELQAWNRMGRRTRIGIGQVLRIAPPGAENAVASEAADGAGATRAAGNAAGAARAADPAS
GAGGALVADAPQPASAPESAADRAADHRVVQETKRHAQSIALAWPAKGAVVETFQPGRNRGIRIVGRAGDPVRAAASGRV
MYAGTGLNGYGTLILVQHNADFLTAYAHNRKVLVKTGDVVQQGEQIAEMGTGDSTRAGMLFEVRRDGKPVNPMPYLASRQ
QG
>Mature_321_residues
TGVVSSMSKSEIDRSVAWLSGVAAAFVVAGCATTSPVTPTDTLAAAASSASAAQPAAAPPGDAAQHPEHAAAPAPIATRY
VVRRGDTLSAIAQANGCTVRELQAWNRMGRRTRIGIGQVLRIAPPGAENAVASEAADGAGATRAAGNAAGAARAADPASG
AGGALVADAPQPASAPESAADRAADHRVVQETKRHAQSIALAWPAKGAVVETFQPGRNRGIRIVGRAGDPVRAAASGRVM
YAGTGLNGYGTLILVQHNADFLTAYAHNRKVLVKTGDVVQQGEQIAEMGTGDSTRAGMLFEVRRDGKPVNPMPYLASRQQ
G

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=297, Percent_Identity=31.6498316498317, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI87082174, Length=238, Percent_Identity=30.2521008403361, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87082297, Length=119, Percent_Identity=36.9747899159664, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 32678; Mature: 32547

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGVVSSMSKSEIDRSVAWLSGVAAAFVVAGCATTSPVTPTDTLAAAASSASAAQPAAAP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
PGDAAQHPEHAAAPAPIATRYVVRRGDTLSAIAQANGCTVRELQAWNRMGRRTRIGIGQV
CCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCCE
LRIAPPGAENAVASEAADGAGATRAAGNAAGAARAADPASGAGGALVADAPQPASAPESA
EEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
ADRAADHRVVQETKRHAQSIALAWPAKGAVVETFQPGRNRGIRIVGRAGDPVRAAASGRV
HHHHHHHHHHHHHHHHHHHEEEECCCCCCEEECCCCCCCCCEEEEECCCCCCCHHCCCCE
MYAGTGLNGYGTLILVQHNADFLTAYAHNRKVLVKTGDVVQQGEQIAEMGTGDSTRAGML
EEEECCCCCCEEEEEEEECCCEEEEEECCCEEEEECCHHHHHHHHHHHCCCCCCCCCCEE
FEVRRDGKPVNPMPYLASRQQG
EEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TGVVSSMSKSEIDRSVAWLSGVAAAFVVAGCATTSPVTPTDTLAAAASSASAAQPAAAP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
PGDAAQHPEHAAAPAPIATRYVVRRGDTLSAIAQANGCTVRELQAWNRMGRRTRIGIGQV
CCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCCE
LRIAPPGAENAVASEAADGAGATRAAGNAAGAARAADPASGAGGALVADAPQPASAPESA
EEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
ADRAADHRVVQETKRHAQSIALAWPAKGAVVETFQPGRNRGIRIVGRAGDPVRAAASGRV
HHHHHHHHHHHHHHHHHHHEEEECCCCCCEEECCCCCCCCCEEEEECCCCCCCHHCCCCE
MYAGTGLNGYGTLILVQHNADFLTAYAHNRKVLVKTGDVVQQGEQIAEMGTGDSTRAGML
EEEECCCCCCEEEEEEEECCCEEEEEECCCEEEEECCHHHHHHHHHHHCCCCCCCCCCEE
FEVRRDGKPVNPMPYLASRQQG
EEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]