Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is chaA [C]
Identifier: 126445900
GI number: 126445900
Start: 1120682
End: 1121767
Strand: Reverse
Name: chaA [C]
Synonym: BMA10247_A1144
Alternate gene names: 126445900
Gene position: 1121767-1120682 (Counterclockwise)
Preceding gene: 126447835
Following gene: 126446988
Centisome position: 47.68
GC content: 71.27
Gene sequence:
>1086_bases ATGCCGATCTCTTCGTCCGCCCTGCCGCGCTGGACGCTCGTCGCCCCGCTCGCCGCCTGGCTGGTGCTCGCGCTGTCGCG CGTCGTGCCGGCCGAAGGCTTCGCCATCGCATTCGTCGCCGCCGCGCTCGCGGGCGCGGTGTTCTCCGCGGTGCATCACG CCGAAGTCGTCGCGCACCGCGTCGGCGAGCCGTTCGGCACGCTCGTGCTCGCGATCGCCGTCACCGTGATCGAGGTCGCG CTGATCGTCTCGGTGATGCTGTCGGCCGGCCCCGAGAAAGCGGGGCTCGCGCGCGACACCGTGTTCGCCGCGGTGATGAT CGTCTGCAACGGGATCGTCGGGCTGTGCCTGCTCGTCGGCGGCTGGCGGCACGGCGAGCAGGACTTCCAGGGGCGCGGCG CGGCGAAGGCGCTCGCGGTGCTCGCGTCGCTGTCGGTGCTCTCGCTCGTGATGCCGAACTATCTGAGCGCCGCGCCGGGC CCACGGCTGTCGACGTCGCAGCTCGCGTTCGCGGGCGTGTCCTCGCTCGTGCTGTACGGCGTGTTCGTGTTCGTGCAGAC GGTTCGCCATCGCGATTACTTCCTGATCGACGGCAGCGCCGACGAATCCGTCCATGCGGTGCCGCCGAGCGGCCGCACCG CGCTCACGAGCATCGCGTTCCTGTTCGTGAGCCTCGTCGCGGTCGTGCTGCTCGCGAAGCTGCTGTCGCCCGCCGTCGAG CGCACGGTGCTGCGGCTCGGCGCGCCCGAGGCGGCCGTCGGCATCGTGATCGCCGCGCTCGTGCTGCTGCCGGAAGGGCT CGCCGCCGTCGGCGCGGCGCGCGCGAACCGGCTACAGACGAGCATGAACCTCGCGCTCGGCTCGGCGCTCGCGAGCATCG GCCTGACGATTCCGACCGTCGCCGCCGTGTTCATCTGGACGGGCGCGCCGCTCACGCTCGGCATCGGCGCAATGGAGACG GTGCTGCTGTCGCTCACGCTGCTCGTCAGCACGCTCACGCTCAGCCTGGGACGCACGACGGTGCTGCACGGCGTCGTGCA TCTGTCGCTGTTCGCCGCCTATCTGTTCCTGTCGATCACGCACTGA
Upstream 100 bases:
>100_bases CGGCCGCTGCCCGCGGACGCGCGCGGCGGCGCGCGGGATTTCGGTGCCGGACCGCCTGTTAGAATCGCTGCTCGCGCCCT GCCACGACCAAGGACACTCC
Downstream 100 bases:
>100_bases CCACGCAACCGGCGCGCCGGCGCACGCGCCGTGTTGCGCTTCCCGCCCGCCGGCGCCGCGCGCGGCCCGTCCTCGTCGGA CTTTCGACATCGGGCAGCGC
Product: calcium/cation antiporter
Products: Na (I) [Periplasm]; Ca (II) [Periplasm]; Proton [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 361; Mature: 360
Protein sequence:
>361_residues MPISSSALPRWTLVAPLAAWLVLALSRVVPAEGFAIAFVAAALAGAVFSAVHHAEVVAHRVGEPFGTLVLAIAVTVIEVA LIVSVMLSAGPEKAGLARDTVFAAVMIVCNGIVGLCLLVGGWRHGEQDFQGRGAAKALAVLASLSVLSLVMPNYLSAAPG PRLSTSQLAFAGVSSLVLYGVFVFVQTVRHRDYFLIDGSADESVHAVPPSGRTALTSIAFLFVSLVAVVLLAKLLSPAVE RTVLRLGAPEAAVGIVIAALVLLPEGLAAVGAARANRLQTSMNLALGSALASIGLTIPTVAAVFIWTGAPLTLGIGAMET VLLSLTLLVSTLTLSLGRTTVLHGVVHLSLFAAYLFLSITH
Sequences:
>Translated_361_residues MPISSSALPRWTLVAPLAAWLVLALSRVVPAEGFAIAFVAAALAGAVFSAVHHAEVVAHRVGEPFGTLVLAIAVTVIEVA LIVSVMLSAGPEKAGLARDTVFAAVMIVCNGIVGLCLLVGGWRHGEQDFQGRGAAKALAVLASLSVLSLVMPNYLSAAPG PRLSTSQLAFAGVSSLVLYGVFVFVQTVRHRDYFLIDGSADESVHAVPPSGRTALTSIAFLFVSLVAVVLLAKLLSPAVE RTVLRLGAPEAAVGIVIAALVLLPEGLAAVGAARANRLQTSMNLALGSALASIGLTIPTVAAVFIWTGAPLTLGIGAMET VLLSLTLLVSTLTLSLGRTTVLHGVVHLSLFAAYLFLSITH >Mature_360_residues PISSSALPRWTLVAPLAAWLVLALSRVVPAEGFAIAFVAAALAGAVFSAVHHAEVVAHRVGEPFGTLVLAIAVTVIEVAL IVSVMLSAGPEKAGLARDTVFAAVMIVCNGIVGLCLLVGGWRHGEQDFQGRGAAKALAVLASLSVLSLVMPNYLSAAPGP RLSTSQLAFAGVSSLVLYGVFVFVQTVRHRDYFLIDGSADESVHAVPPSGRTALTSIAFLFVSLVAVVLLAKLLSPAVER TVLRLGAPEAAVGIVIAALVLLPEGLAAVGAARANRLQTSMNLALGSALASIGLTIPTVAAVFIWTGAPLTLGIGAMETV LLSLTLLVSTLTLSLGRTTVLHGVVHLSLFAAYLFLSITH
Specific function: Possible cation transporter [H]
COG id: COG0387
COG function: function code P; Ca2+/H+ antiporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium/potassium/calcium exchanger family [H]
Homologues:
Organism=Escherichia coli, GI1787468, Length=353, Percent_Identity=37.3937677053824, Blast_Score=201, Evalue=4e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004713 - InterPro: IPR004837 [H]
Pfam domain/function: PF01699 Na_Ca_ex [H]
EC number: NA
Molecular weight: Translated: 37066; Mature: 36935
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPISSSALPRWTLVAPLAAWLVLALSRVVPAEGFAIAFVAAALAGAVFSAVHHAEVVAHR CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VGEPFGTLVLAIAVTVIEVALIVSVMLSAGPEKAGLARDTVFAAVMIVCNGIVGLCLLVG HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC GWRHGEQDFQGRGAAKALAVLASLSVLSLVMPNYLSAAPGPRLSTSQLAFAGVSSLVLYG CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH VFVFVQTVRHRDYFLIDGSADESVHAVPPSGRTALTSIAFLFVSLVAVVLLAKLLSPAVE HHHHHHHHHCCCEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTVLRLGAPEAAVGIVIAALVLLPEGLAAVGAARANRLQTSMNLALGSALASIGLTIPTV HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH AAVFIWTGAPLTLGIGAMETVLLSLTLLVSTLTLSLGRTTVLHGVVHLSLFAAYLFLSIT HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC H C >Mature Secondary Structure PISSSALPRWTLVAPLAAWLVLALSRVVPAEGFAIAFVAAALAGAVFSAVHHAEVVAHR CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VGEPFGTLVLAIAVTVIEVALIVSVMLSAGPEKAGLARDTVFAAVMIVCNGIVGLCLLVG HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC GWRHGEQDFQGRGAAKALAVLASLSVLSLVMPNYLSAAPGPRLSTSQLAFAGVSSLVLYG CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH VFVFVQTVRHRDYFLIDGSADESVHAVPPSGRTALTSIAFLFVSLVAVVLLAKLLSPAVE HHHHHHHHHCCCEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTVLRLGAPEAAVGIVIAALVLLPEGLAAVGAARANRLQTSMNLALGSALASIGLTIPTV HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH AAVFIWTGAPLTLGIGAMETVLLSLTLLVSTLTLSLGRTTVLHGVVHLSLFAAYLFLSIT HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC H C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Na (I) [Cytoplasm]; Proton [Periplasm]; Ca (II) [Cytoplasm]; Proton [Periplasm] [C]
Specific reaction: Na (I) [Cytoplasm] + Proton [Periplasm] = Proton [Cytoplasm] + Na (I) [Periplasm] Ca (II) [Cytoplasm] + Proton [Periplasm] = Ca (II) [Periplasm] + Proton [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]