| Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
|---|---|
| Accession | NC_009079 |
| Length | 2,352,693 |
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The map label for this gene is ychM [C]
Identifier: 126445899
GI number: 126445899
Start: 2250980
End: 2252812
Strand: Direct
Name: ychM [C]
Synonym: BMA10247_A2321
Alternate gene names: 126445899
Gene position: 2250980-2252812 (Clockwise)
Preceding gene: 126447816
Following gene: 126447575
Centisome position: 95.68
GC content: 73.0
Gene sequence:
>1833_bases TTGACCGAACGCGAACGCGCCGCGCGCGGGCGCAACGACGCGCGGCGCGGCGGCGGCGATAGCGGCGGCGACGACGAGGC GTGGCGGCGCTGGCTGCCGGGCATCGCGACGTTGCGCACGTACCGGCGCGCGTGGCTCGCACGGGATCTGTACGCGGGCG TCGCGCTGACCGCGGTGCTCGTGCCGGTCGGCATGAGCTACGCTCAGGCGGCGGGCCTGCCGGTCATCGCCGGCCTGAAC GCGTCGATCGCCGCGCTCGTCGGCTACGCGATCTTCGGGCCAAGCAGGATCCTGGTGCTCGGCCCCGATTCGGCGCTCGC CGCGCTGATCGCCGGCGCGATCGCGCCGCTCGCGCACGGCGAGCCCGCGCACGCGGTCGCGCTCGCGGCCGCGCTCGCGT TGATGTCCGGCGGCTTTTGCGTGCTCGCCGGCCTGCTGAAGCTGGGCTTCGTCACCGATCTGCTGTCCAAGCCGATTCAA TACGGCTATCTGAACGGGCTCGCGCTGACGCTGATCGCGAGCCAGTTGCCGAGCCTGCTCGGCACCGTGCCGCTCGGCGG CACATTCGTCGACCAGGTCGCGAGCCTCGCCGCCACCGTCGCGCAAGGCCGGATCGATTTCGCGTCGCTCGCGCTCGGCG GCGGCTGTCTCGCCGGCATCGCGCTGCTGCGGCGCGTCGCGCCTGCGTGGCCGGGCATGCTGATCGCGGTCGCCGGCGCG TCGATCGTCGCCGCGTGGCTCGGCGCGGCGCCGGACGCGGGCGGCGCACACGCGCATGTCGCCTACGCGCATGTCGCAAA CGCGCATGTCGCTCTCGTCGGCTCGCTCGCCGGCACGCTGCCGCCGCTCGGCCTGCCGTCGATCTCGCTCGCCGACGCGA GCCGGCTCATCGCCGGCGCGCTCGCGATCGCGATGGTGTCGGTCGCCGACATCAGCGTGCTGTCGCATGTGTTCGCGCAG CACGACGGCAGCGAAACGGACCGCAATCAGGAACTGTGCGCGCTCGGCGCGGCGAACCTGCTCGCCGGCATGCTGCGCGG CTGCGCCGTCAGCAGCAGCGCGTCGCGCACGCCCGTCGCGCTCGCGGCCGGCGCGCGCACCCAGTTGACGAGCCTCGTCG CGGCCGCGTGCATCGCGCTGCTGCTCATCGCGCCGACGCTGCTCGCCCGCGTGCCGCTCGCGGCGCTCGCGGCCGTCGTC GTCTATTCGGCGAACGCGCTCGTCGACGTGCGTGCGATCGTTCGGCTCTATCGCGTGCGCCGCGGCGAATGCGCCGTATC GGTGCTCTGCTTCGCGGGCGTCGTGCTGCTCGGCGTCGTGCCGGGCATCCTGCTCGCGGTCGGGCTGTCGCTGCTGTCGT TCGTCTGGCGCGCGTGGCACCCGTACGACGCGGTGCTCGGCCGCGTCGAGGGCATGCACGGCTATCACGACGTGTCGCGC CACCCGGGCGCGACCCTGACGCGCGGCCTCGTCGCGTTTCGCTGGGACGCGCCGCTGTTCCATGCGAACGCGACGATCTT TCGCGATCACGTGCGCGACGCGATCGCCGAGGCCGGCGCGCCGGTGCGCTGCGTCGTGATCGCCGCCGAACCGATCACCG ATGTCGACGTCACCGCCGCCGACATGCTCGCGACGCTGCGCGACGAGCTCGCCGCGCGGCGGATCGCGCTGGTGTTCGCG GAAATGAAGGGGCCGGTCAAGGACCGGTTGCGCACGTACGGGCTCTTCGAGAAGATCGGCGCCGATCATTTTTTTCCGAC GGTGACGGACGCGATCGAGCATTTCACGCGGATGCGCAAGGACGTGGCGACCGCGCGGCGGGCGCGGCGTTAG
Upstream 100 bases:
>100_bases CGCTGCTGCACGTCGATGCGCACCCGCAACTGCTGCTGCGCATCGGACGCGGCCCGGTCGTCGCGCATGCGCCACGGCGT CCGCTGATGGACGTCGTGTC
Downstream 100 bases:
>100_bases CGGCGTTCCGGCTTTTTTCGGGAGCGTGAGCGGTGCGCGCACGCGCGCCGATCCGATTAGGGGGATCGGCGCGGCTTCGT TCGGTCGACGATGACGGCGC
Product: sulfate permease family inorganic anion transporter
Products: Proton [Cytoplasm]; SO42- [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 610; Mature: 609
Protein sequence:
>610_residues MTERERAARGRNDARRGGGDSGGDDEAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLN ASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQ YGYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGA SIVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQ HDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLIAPTLLARVPLAALAAVV VYSANALVDVRAIVRLYRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSR HPGATLTRGLVAFRWDAPLFHANATIFRDHVRDAIAEAGAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFA EMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR
Sequences:
>Translated_610_residues MTERERAARGRNDARRGGGDSGGDDEAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLN ASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQ YGYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGA SIVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQ HDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLIAPTLLARVPLAALAAVV VYSANALVDVRAIVRLYRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSR HPGATLTRGLVAFRWDAPLFHANATIFRDHVRDAIAEAGAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFA EMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR >Mature_609_residues TERERAARGRNDARRGGGDSGGDDEAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLNA SIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQY GYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGAS IVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQH DGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLIAPTLLARVPLAALAAVVV YSANALVDVRAIVRLYRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSRH PGATLTRGLVAFRWDAPLFHANATIFRDHVRDAIAEAGAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFAE MKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR
Specific function: Expression in E.coli induces sulfate uptake during early-to mid-log phase growth. Uptake is maximal at pH 6.0, is sulfate-specific, requires E.coli CysA and the transmembrane segment but not the STAS domain of the protein [H]
COG id: COG0659
COG function: function code P; Sulfate permease and related transporters (MFS superfamily)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 STAS domain [H]
Homologues:
Organism=Homo sapiens, GI94721253, Length=509, Percent_Identity=28.8801571709234, Blast_Score=155, Evalue=1e-37, Organism=Homo sapiens, GI94721257, Length=509, Percent_Identity=28.8801571709234, Blast_Score=155, Evalue=1e-37, Organism=Homo sapiens, GI94721255, Length=509, Percent_Identity=28.8801571709234, Blast_Score=155, Evalue=1e-37, Organism=Homo sapiens, GI94721259, Length=509, Percent_Identity=28.8801571709234, Blast_Score=155, Evalue=1e-37, Organism=Homo sapiens, GI262206105, Length=602, Percent_Identity=27.7408637873754, Blast_Score=145, Evalue=9e-35, Organism=Homo sapiens, GI262206075, Length=602, Percent_Identity=27.7408637873754, Blast_Score=145, Evalue=9e-35, Organism=Homo sapiens, GI262206069, Length=602, Percent_Identity=27.7408637873754, Blast_Score=145, Evalue=9e-35, Organism=Homo sapiens, GI262206063, Length=602, Percent_Identity=27.7408637873754, Blast_Score=145, Evalue=9e-35, Organism=Homo sapiens, GI39752683, Length=511, Percent_Identity=25.6360078277886, Blast_Score=145, Evalue=9e-35, Organism=Homo sapiens, GI45827800, Length=511, Percent_Identity=25.6360078277886, Blast_Score=145, Evalue=9e-35, Organism=Homo sapiens, GI47131207, Length=653, Percent_Identity=27.2588055130168, Blast_Score=139, Evalue=1e-32, Organism=Homo sapiens, GI20336272, Length=653, Percent_Identity=27.2588055130168, Blast_Score=139, Evalue=1e-32, Organism=Homo sapiens, GI4557535, Length=513, Percent_Identity=25.1461988304094, Blast_Score=134, Evalue=2e-31, Organism=Homo sapiens, GI269784651, Length=509, Percent_Identity=24.950884086444, Blast_Score=124, Evalue=3e-28, Organism=Homo sapiens, GI4505697, Length=521, Percent_Identity=25.3358925143954, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI45827802, Length=457, Percent_Identity=26.0393873085339, Blast_Score=118, Evalue=2e-26, Organism=Homo sapiens, GI100913030, Length=525, Percent_Identity=22.8571428571429, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI16418413, Length=537, Percent_Identity=23.2774674115456, Blast_Score=103, Evalue=4e-22, Organism=Homo sapiens, GI217272867, Length=537, Percent_Identity=23.2774674115456, Blast_Score=103, Evalue=7e-22, Organism=Homo sapiens, GI65506789, Length=337, Percent_Identity=27.299703264095, Blast_Score=78, Evalue=3e-14, Organism=Escherichia coli, GI87081859, Length=452, Percent_Identity=24.1150442477876, Blast_Score=69, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17562578, Length=640, Percent_Identity=23.59375, Blast_Score=141, Evalue=1e-33, Organism=Caenorhabditis elegans, GI86564196, Length=640, Percent_Identity=23.4375, Blast_Score=135, Evalue=7e-32, Organism=Caenorhabditis elegans, GI17566848, Length=560, Percent_Identity=24.8214285714286, Blast_Score=134, Evalue=2e-31, Organism=Caenorhabditis elegans, GI86565215, Length=615, Percent_Identity=22.6016260162602, Blast_Score=114, Evalue=2e-25, Organism=Caenorhabditis elegans, GI193203292, Length=523, Percent_Identity=22.3709369024857, Blast_Score=110, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17551690, Length=610, Percent_Identity=22.9508196721311, Blast_Score=106, Evalue=3e-23, Organism=Caenorhabditis elegans, GI86564876, Length=545, Percent_Identity=21.4678899082569, Blast_Score=87, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6319771, Length=470, Percent_Identity=23.1914893617021, Blast_Score=100, Evalue=6e-22, Organism=Saccharomyces cerevisiae, GI6323121, Length=162, Percent_Identity=33.9506172839506, Blast_Score=87, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6325260, Length=602, Percent_Identity=18.936877076412, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24649801, Length=590, Percent_Identity=24.7457627118644, Blast_Score=134, Evalue=2e-31, Organism=Drosophila melanogaster, GI24651449, Length=574, Percent_Identity=22.9965156794425, Blast_Score=125, Evalue=1e-28, Organism=Drosophila melanogaster, GI85815873, Length=585, Percent_Identity=23.7606837606838, Blast_Score=119, Evalue=9e-27, Organism=Drosophila melanogaster, GI21358633, Length=560, Percent_Identity=23.9285714285714, Blast_Score=113, Evalue=4e-25, Organism=Drosophila melanogaster, GI24666186, Length=693, Percent_Identity=22.6551226551227, Blast_Score=113, Evalue=4e-25, Organism=Drosophila melanogaster, GI19922482, Length=549, Percent_Identity=22.7686703096539, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI21358229, Length=585, Percent_Identity=23.7606837606838, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI24663084, Length=605, Percent_Identity=25.2892561983471, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI21357695, Length=605, Percent_Identity=25.2892561983471, Blast_Score=94, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002645 - InterPro: IPR001902 - InterPro: IPR011547 [H]
Pfam domain/function: PF01740 STAS; PF00916 Sulfate_transp [H]
EC number: NA
Molecular weight: Translated: 63086; Mature: 62955
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: PS50801 STAS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTERERAARGRNDARRGGGDSGGDDEAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVL CCCHHHHHCCCCHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHG HHHCHHHHHHCCCCEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCC EPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLL CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH GTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGA CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHH SIVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGA HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH LAIAMVSVADISVLSHVFAQHDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVA HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE LAAGARTQLTSLVAAACIALLLIAPTLLARVPLAALAAVVVYSANALVDVRAIVRLYRVR EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH RGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHC HPGATLTRGLVAFRWDAPLFHANATIFRDHVRDAIAEAGAPVRCVVIAAEPITDVDVTAA CCCCHHHHCHHEEEECCCEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHH DMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRK HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH DVATARRARR HHHHHHHCCC >Mature Secondary Structure TERERAARGRNDARRGGGDSGGDDEAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVL CCHHHHHCCCCHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHG HHHCHHHHHHCCCCEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCC EPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLL CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH GTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGA CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHH SIVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGA HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH LAIAMVSVADISVLSHVFAQHDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVA HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE LAAGARTQLTSLVAAACIALLLIAPTLLARVPLAALAAVVVYSANALVDVRAIVRLYRVR EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH RGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHC HPGATLTRGLVAFRWDAPLFHANATIFRDHVRDAIAEAGAPVRCVVIAAEPITDVDVTAA CCCCHHHHCHHEEEECCCEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHH DMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRK HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH DVATARRARR HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; SO42- [Periplasm] [C]
Specific reaction: Proton [Periplasm] + SO42- [Periplasm] = Proton [Cytoplasm] + SO42- [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]