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The map label for this gene is kdgR [H]

Identifier: 126445705

GI number: 126445705

Start: 1729814

End: 1730638

Strand: Direct

Name: kdgR [H]

Synonym: BMA10247_A1794

Alternate gene names: 126445705

Gene position: 1729814-1730638 (Clockwise)

Preceding gene: 126447536

Following gene: 126445610

Centisome position: 73.52

GC content: 70.91

Gene sequence:

>825_bases
ATGAACGCCAGGAAACCCCGACCGGCCGGCCCCGCCGACGAACCGCAGGATCTCGACGACGCGGACCGCTACCGCGCGCC
GGCGCTCGACAAGGGGCTCGACATCCTCGAGCTGCTGTCCGAGCGCAAGGACGGCCTGACGCGCACGGAGATCACGAAGG
AGCTCGGGCGCAACGCGAGCGAGATCTACCGGATGCTCGAGCGGCTCGTCGCGCGCCAGTACGTGATCCGCTCGCCCGGC
GGCGACCGTTATTCGCTGAGCCTGAAGCTGTATGCGCTCGCGCACCGGCATCCGCCGATGCACCGGCTGATCGCGGAGGC
GCTGCCGCCGATGCAGCGCTTCGCGGACGCGGCCGAGCAGTCGTGCCATCTGTCCGTCTACGATCGGGGCAACCTGCTCG
TGATCGCGCAGGTCGACGGGCCCGGCATCTGGGGGATGTCGGTGAAGCTCGGCTCGCGCGTCGGGCTCGTCGATACCGCG
TCGGGCCACGCGCTGCTCGCGTTCCAGTCCGCCGAGCAGCGCGCGCACATGCTCACCGAGCATACGAAGGTGAAAGGCGA
GCAGCCGCTCGCCGCGCGCAATCTCGATGCGCGCGTCGACGCGATCCGCGCGGCCGGGCACGTGCGGCAGGACAGCCGCC
AGCTGTTCGGCGTCACCGACATCACGTATCCGATTCTCGGCCCGGCGGGCCACGCGATCGCCGTGCTCACGTGCCCTTAC
ATCCGCCGGATCGACGCGTACGTCGCGCCGCCGATCGACGAGGTCGTCGCGCTGCTGCGTGCGACGGCCGCGGGCCTGTC
GATGGTGGGCGAGGCGGCCGTGTGA

Upstream 100 bases:

>100_bases
ACTTTTTGAAGTCAAGGAGACCGTGACGCAGAATGAGTGCGTATTTTCCCTATCCTGTCCTTATTCGCCCTTGCATCCAT
CCGACGCACCGAACGCCAAC

Downstream 100 bases:

>100_bases
CGATCGCGGCGGCACGGCGCGCGAACGACGAAGCGCCGCTCATGCGGGCCTCGCGAAGGCTGCGGGATTAGAGCGGTTCG
GGGGGGCGCGCATTTCGCCG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MNARKPRPAGPADEPQDLDDADRYRAPALDKGLDILELLSERKDGLTRTEITKELGRNASEIYRMLERLVARQYVIRSPG
GDRYSLSLKLYALAHRHPPMHRLIAEALPPMQRFADAAEQSCHLSVYDRGNLLVIAQVDGPGIWGMSVKLGSRVGLVDTA
SGHALLAFQSAEQRAHMLTEHTKVKGEQPLAARNLDARVDAIRAAGHVRQDSRQLFGVTDITYPILGPAGHAIAVLTCPY
IRRIDAYVAPPIDEVVALLRATAAGLSMVGEAAV

Sequences:

>Translated_274_residues
MNARKPRPAGPADEPQDLDDADRYRAPALDKGLDILELLSERKDGLTRTEITKELGRNASEIYRMLERLVARQYVIRSPG
GDRYSLSLKLYALAHRHPPMHRLIAEALPPMQRFADAAEQSCHLSVYDRGNLLVIAQVDGPGIWGMSVKLGSRVGLVDTA
SGHALLAFQSAEQRAHMLTEHTKVKGEQPLAARNLDARVDAIRAAGHVRQDSRQLFGVTDITYPILGPAGHAIAVLTCPY
IRRIDAYVAPPIDEVVALLRATAAGLSMVGEAAV
>Mature_274_residues
MNARKPRPAGPADEPQDLDDADRYRAPALDKGLDILELLSERKDGLTRTEITKELGRNASEIYRMLERLVARQYVIRSPG
GDRYSLSLKLYALAHRHPPMHRLIAEALPPMQRFADAAEQSCHLSVYDRGNLLVIAQVDGPGIWGMSVKLGSRVGLVDTA
SGHALLAFQSAEQRAHMLTEHTKVKGEQPLAARNLDARVDAIRAAGHVRQDSRQLFGVTDITYPILGPAGHAIAVLTCPY
IRRIDAYVAPPIDEVVALLRATAAGLSMVGEAAV

Specific function: Transcriptional repressor of genes involved in pectinolysis and in pectinase secretion. Controls all the genes involved in pectin catabolism, including the pel genes encoding pectate lyases, kdgT which encodes the 2-keto-3-deoxygluconate transport system

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1788131, Length=241, Percent_Identity=25.7261410788382, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29918; Mature: 29918

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNARKPRPAGPADEPQDLDDADRYRAPALDKGLDILELLSERKDGLTRTEITKELGRNAS
CCCCCCCCCCCCCCCCCCCCHHHHCCCCHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCHH
EIYRMLERLVARQYVIRSPGGDRYSLSLKLYALAHRHPPMHRLIAEALPPMQRFADAAEQ
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHC
SCHLSVYDRGNLLVIAQVDGPGIWGMSVKLGSRVGLVDTASGHALLAFQSAEQRAHMLTE
CCEEEEEECCCEEEEEEECCCCEEEEEEECCCCCCEEECCCCCEEEEEHHHHHHHHHHHH
HTKVKGEQPLAARNLDARVDAIRAAGHVRQDSRQLFGVTDITYPILGPAGHAIAVLTCPY
HHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHEECCHHCCCCCCCCCCCEEEEEECHH
IRRIDAYVAPPIDEVVALLRATAAGLSMVGEAAV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNARKPRPAGPADEPQDLDDADRYRAPALDKGLDILELLSERKDGLTRTEITKELGRNAS
CCCCCCCCCCCCCCCCCCCCHHHHCCCCHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCHH
EIYRMLERLVARQYVIRSPGGDRYSLSLKLYALAHRHPPMHRLIAEALPPMQRFADAAEQ
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHC
SCHLSVYDRGNLLVIAQVDGPGIWGMSVKLGSRVGLVDTASGHALLAFQSAEQRAHMLTE
CCEEEEEECCCEEEEEEECCCCEEEEEEECCCCCCEEECCCCCEEEEEHHHHHHHHHHHH
HTKVKGEQPLAARNLDARVDAIRAAGHVRQDSRQLFGVTDITYPILGPAGHAIAVLTCPY
HHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHEECCHHCCCCCCCCCCCEEEEEECHH
IRRIDAYVAPPIDEVVALLRATAAGLSMVGEAAV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1840643; 1545709 [H]