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The map label for this gene is yfiF [H]

Identifier: 126445681

GI number: 126445681

Start: 1203214

End: 1204212

Strand: Direct

Name: yfiF [H]

Synonym: BMA10247_A1237

Alternate gene names: 126445681

Gene position: 1203214-1204212 (Clockwise)

Preceding gene: 126446196

Following gene: 126447214

Centisome position: 51.14

GC content: 67.97

Gene sequence:

>999_bases
GTGAACGGCGGGCGCCCGGCCGTGCACGCGCAGGAGCGACAGATGAACCCAGACCTCGAGATCGTCCCCACCCGCCGCGA
CGAATCGTTTCGCGCATGGTCGCACGACTATCCGCACACGGTCGCGAAATGGCATTTTCATCCGGAGTACGAAATCCACC
TGATTCAGGGTTCGCGCGGCAAGTTCTTCGTCGGCGACCATATCGGCGATTTCGCGCCCGGCAACCTCGTCGTCACCGGG
CCGAACCTGCCGCACAACTGGATCAGCGAGCTCGGCCCCGGCGAGCGCGTGCCGTCGCGCGATGTCGTGCTGCAGTTCTC
GCGCGACGCGGCCGAGAAGATGGTGGCCGCGTTCGCCGAGCTGCAGCCGGTGCTCGACCTGATAGACGAAGCGTCGCGCG
GCGTGCAGTTTCCGGACGAGATCGGGCTCGCCGTCGCGCCGCTGATGCTCGAGCTCGCGAGCGCGCACGGCTGCCGGCGC
GTCGAGGTGCTGATGGCGCTGTTCGACCGGCTGGCGTCGTGCGCCGCGCGTCGCACGCTCGCCGGCCCCGGCTACCGGAT
CGACGCGCAGCACTACATGTCGTCGACGATCAACCAGGTGCTCGCGTACCTGCGGCAGAACCTGCCGGGCGCGCTACGCG
AGGCGGACGTCGCCGAATTCGCCGGCATGAGCGTGAGCACGTTCACGCGCTTCTTCCGCCGGCACACGGGCTCGACGTTC
GTCCAGTACCTGAACCGGCTGCGGATCAACGAAGCGTGCGAGCTGCTGATGTGCTCGGCGCTCAGCGTCACCGACATCTG
CTACCGCATCGGCTTCAACAACCTGTCGAACTTCAACCGGCAATTCCTCGCGATGAAGGGGATGCCGCCGTCGCGCTTTC
GCGCGCTGCATCGGTTGAACGAGCCGCATGACGCGCCCGAACCGCACGAGCCGCACGCGTCGCTCGCGCCGGCCACCGCG
CGCGCCGTCATCCATTCGCACCGGAGCCTCCACCCGTGA

Upstream 100 bases:

>100_bases
TGATGCTGCCCGAGGCCGGCGCGCCCGCCGACGCCGAGCGGCCCGGCGCCGCGATGCGGCCTTCGCCGGGCGCGCCGCAC
CGATTCACGATGTCGCGCCC

Downstream 100 bases:

>100_bases
CCTATCTCGGCATCGATCTCGGCACATCCGAAGTCAAGGCGATCCTGACCGACGCCGATTCCGCGCCGCTCGCCGTCGAG
CGCCCCCATCCGCACTGGTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MNGGRPAVHAQERQMNPDLEIVPTRRDESFRAWSHDYPHTVAKWHFHPEYEIHLIQGSRGKFFVGDHIGDFAPGNLVVTG
PNLPHNWISELGPGERVPSRDVVLQFSRDAAEKMVAAFAELQPVLDLIDEASRGVQFPDEIGLAVAPLMLELASAHGCRR
VEVLMALFDRLASCAARRTLAGPGYRIDAQHYMSSTINQVLAYLRQNLPGALREADVAEFAGMSVSTFTRFFRRHTGSTF
VQYLNRLRINEACELLMCSALSVTDICYRIGFNNLSNFNRQFLAMKGMPPSRFRALHRLNEPHDAPEPHEPHASLAPATA
RAVIHSHRSLHP

Sequences:

>Translated_332_residues
MNGGRPAVHAQERQMNPDLEIVPTRRDESFRAWSHDYPHTVAKWHFHPEYEIHLIQGSRGKFFVGDHIGDFAPGNLVVTG
PNLPHNWISELGPGERVPSRDVVLQFSRDAAEKMVAAFAELQPVLDLIDEASRGVQFPDEIGLAVAPLMLELASAHGCRR
VEVLMALFDRLASCAARRTLAGPGYRIDAQHYMSSTINQVLAYLRQNLPGALREADVAEFAGMSVSTFTRFFRRHTGSTF
VQYLNRLRINEACELLMCSALSVTDICYRIGFNNLSNFNRQFLAMKGMPPSRFRALHRLNEPHDAPEPHEPHASLAPATA
RAVIHSHRSLHP
>Mature_332_residues
MNGGRPAVHAQERQMNPDLEIVPTRRDESFRAWSHDYPHTVAKWHFHPEYEIHLIQGSRGKFFVGDHIGDFAPGNLVVTG
PNLPHNWISELGPGERVPSRDVVLQFSRDAAEKMVAAFAELQPVLDLIDEASRGVQFPDEIGLAVAPLMLELASAHGCRR
VEVLMALFDRLASCAARRTLAGPGYRIDAQHYMSSTINQVLAYLRQNLPGALREADVAEFAGMSVSTFTRFFRRHTGSTF
VQYLNRLRINEACELLMCSALSVTDICYRIGFNNLSNFNRQFLAMKGMPPSRFRALHRLNEPHDAPEPHEPHASLAPATA
RAVIHSHRSLHP

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37227; Mature: 37227

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGGRPAVHAQERQMNPDLEIVPTRRDESFRAWSHDYPHTVAKWHFHPEYEIHLIQGSRG
CCCCCCCCCCHHHCCCCCCEEEECCCCCCHHHCCCCCCCHHHEEEECCCEEEEEEECCCC
KFFVGDHIGDFAPGNLVVTGPNLPHNWISELGPGERVPSRDVVLQFSRDAAEKMVAAFAE
CEEECCCCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCHHEEEECHHHHHHHHHHHHH
LQPVLDLIDEASRGVQFPDEIGLAVAPLMLELASAHGCRRVEVLMALFDRLASCAARRTL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
AGPGYRIDAQHYMSSTINQVLAYLRQNLPGALREADVAEFAGMSVSTFTRFFRRHTGSTF
CCCCCEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
VQYLNRLRINEACELLMCSALSVTDICYRIGFNNLSNFNRQFLAMKGMPPSRFRALHRLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHEEECCCCHHHHHHHHHCC
EPHDAPEPHEPHASLAPATARAVIHSHRSLHP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNGGRPAVHAQERQMNPDLEIVPTRRDESFRAWSHDYPHTVAKWHFHPEYEIHLIQGSRG
CCCCCCCCCCHHHCCCCCCEEEECCCCCCHHHCCCCCCCHHHEEEECCCEEEEEEECCCC
KFFVGDHIGDFAPGNLVVTGPNLPHNWISELGPGERVPSRDVVLQFSRDAAEKMVAAFAE
CEEECCCCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCHHEEEECHHHHHHHHHHHHH
LQPVLDLIDEASRGVQFPDEIGLAVAPLMLELASAHGCRRVEVLMALFDRLASCAARRTL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
AGPGYRIDAQHYMSSTINQVLAYLRQNLPGALREADVAEFAGMSVSTFTRFFRRHTGSTF
CCCCCEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
VQYLNRLRINEACELLMCSALSVTDICYRIGFNNLSNFNRQFLAMKGMPPSRFRALHRLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHEEECCCCHHHHHHHHHCC
EPHDAPEPHEPHASLAPATARAVIHSHRSLHP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704981; 9384377 [H]