Click here to switch to the map view.

The map label for this gene is yccM [C]

Identifier: 126445662

GI number: 126445662

Start: 864265

End: 865665

Strand: Reverse

Name: yccM [C]

Synonym: BMA10247_A0911

Alternate gene names: 126445662

Gene position: 865665-864265 (Counterclockwise)

Preceding gene: 126447384

Following gene: 126446369

Centisome position: 36.79

GC content: 68.52

Gene sequence:

>1401_bases
ATGAGCGCCGTCGCCGGCTGTCGCCGCACGAGCCTCGTCGCGCAAGCCGGGCACTGGATGCAGCGCCACGGCGCGCTGAT
CCGCGGCATCCAGTGGGTGGTCGTGCTCGTCTATGCGTTCCTGATTCTCGTGCCGGCGTTCACGCCGCTGCCCGACGACA
CCGCGCATCTGTGGAGCAACCTGACGCTCGCCGCGCAGTTCGTTTTCTGGGGCATCTGGTGGCCGTTCGTGCTGCTGTCG
ATGGTGATGCTCGGCCGTGTCTGGTGCGGCGTGCTGTGCCCCGAGGGCGCATTGAGCGAGTTCGCGAGCAAGTTCGGCCG
CGGCCGCGCGATTCCGCGCTGGATGCGCTGGGGCGGCTGGCCGTTCGTCGCATTCGGCCTGACGACGATCTACGGGCAGA
TGGTGAGCGTCTATCAGTACCCGCGCGCCGTGTTGCTCGTGCTCGGCGGCTCGACGCTCGCCGCGATCGTGATCGGCTTC
CTGTATGGGCGCGAAAAGCGCGTGTGGTGCCGCTATCTGTGCCCGGTGAACGGCGTCTTTTCGCTGCTCGCGCGCCTTTC
GCCGCTGCGCTACAAGGTCGACGAGGATGCGTGGCGCCGCTCTTACAGGAAAGGCGAGGACGGCCATCGCGTGATTCCGA
TCAACTGCGCGCCGCTCGTGCCGCTGCGCAACATGAAGGGCGCGGCGGCGTGCCACATGTGCGGCCGATGCAGCGGGCAC
CGCGGCGCGATCGAACTGACGGCGCGCTCGCCGTCCGAGGAAGTGGTCGCGCTCGGCGACAGGCAGGCGAGCAGCTGGGA
CACGGCGCTCATCCTGTACGGCCTGCTCGGCATCGCGATCGGCGCGTTCCACTGGACGGTGAGCCCATGGTTCGTGCAGA
TCAAGCAGACGCTCGCGGGCTGGCTGATCGATCACGACATCATGTGGCCGCTCGATACGAACGCGCCCTGGTTCATCTTC
ACGCACTATCCCGAGCACAATGATGTGTTTTCGTGGCTCGACGGCTCGCTCGTCATCGCGTACATCGTCGGTACGGGCCT
CGCGTACGGCACGGCGCTCGCCGTGCTGCTCGCCGGCGCCGCCGCGATGCTCGGCCGGTTCGAGCGCGTGCGGCTCCATC
ACCTTGCACAGGCGCTGATTCCGCTCGCGGGCGCGGGCGTGTTCCTCGGTTTGTCGGCGACGACGCTGTCGCTGCTGCGC
GCCGAGCACGTGCCGCTCGGCTGGGCGCCGGACGTGCGCATCGCGATCCTCGTCGGTGCGAATCTGTGGAGCGCGTGGCT
CGCGTGGCTGGTCACCGGCCGCTATGCGAGCTGGCCGCGGCGGCTGCTCGCGATGCTCTGGTTCGGCGCCGCGCTCGCGG
TGGTCGACAGCGCGTGGTGGCTGATGTTCTGGGGTTTCTGA

Upstream 100 bases:

>100_bases
CGTTGACCAATCTCGTCGCCTACGTGGCCTACTGGGCGATCGTCTATCTGCTGCTCAAGCGCGCCGCGCGCCGCCCGGCG
GCGACTGCGGGGCGGCCGGC

Downstream 100 bases:

>100_bases
CGCGCTTCGGGCGGTATGATGCATCCGTCGATGGGCATGCATCGCGAAGGAGTGTCCAGATGAGAACCAAACCCGTTCTG
ACGAGCGACGACGTGAACAA

Product: hypothetical protein

Products: NA

Alternate protein names: Regulatory Protein; Polyferredoxin; Nitrogen Assimilation Regulatory Protein; Polyferredoxin-Like Protein; Polyferredoxin-Like; Nitrogen Regulatory Protein; Ferredoxin; Polyferredoxin Protein; Sigma-54 Interaction Domain Family

Number of amino acids: Translated: 466; Mature: 465

Protein sequence:

>466_residues
MSAVAGCRRTSLVAQAGHWMQRHGALIRGIQWVVVLVYAFLILVPAFTPLPDDTAHLWSNLTLAAQFVFWGIWWPFVLLS
MVMLGRVWCGVLCPEGALSEFASKFGRGRAIPRWMRWGGWPFVAFGLTTIYGQMVSVYQYPRAVLLVLGGSTLAAIVIGF
LYGREKRVWCRYLCPVNGVFSLLARLSPLRYKVDEDAWRRSYRKGEDGHRVIPINCAPLVPLRNMKGAAACHMCGRCSGH
RGAIELTARSPSEEVVALGDRQASSWDTALILYGLLGIAIGAFHWTVSPWFVQIKQTLAGWLIDHDIMWPLDTNAPWFIF
THYPEHNDVFSWLDGSLVIAYIVGTGLAYGTALAVLLAGAAAMLGRFERVRLHHLAQALIPLAGAGVFLGLSATTLSLLR
AEHVPLGWAPDVRIAILVGANLWSAWLAWLVTGRYASWPRRLLAMLWFGAALAVVDSAWWLMFWGF

Sequences:

>Translated_466_residues
MSAVAGCRRTSLVAQAGHWMQRHGALIRGIQWVVVLVYAFLILVPAFTPLPDDTAHLWSNLTLAAQFVFWGIWWPFVLLS
MVMLGRVWCGVLCPEGALSEFASKFGRGRAIPRWMRWGGWPFVAFGLTTIYGQMVSVYQYPRAVLLVLGGSTLAAIVIGF
LYGREKRVWCRYLCPVNGVFSLLARLSPLRYKVDEDAWRRSYRKGEDGHRVIPINCAPLVPLRNMKGAAACHMCGRCSGH
RGAIELTARSPSEEVVALGDRQASSWDTALILYGLLGIAIGAFHWTVSPWFVQIKQTLAGWLIDHDIMWPLDTNAPWFIF
THYPEHNDVFSWLDGSLVIAYIVGTGLAYGTALAVLLAGAAAMLGRFERVRLHHLAQALIPLAGAGVFLGLSATTLSLLR
AEHVPLGWAPDVRIAILVGANLWSAWLAWLVTGRYASWPRRLLAMLWFGAALAVVDSAWWLMFWGF
>Mature_465_residues
SAVAGCRRTSLVAQAGHWMQRHGALIRGIQWVVVLVYAFLILVPAFTPLPDDTAHLWSNLTLAAQFVFWGIWWPFVLLSM
VMLGRVWCGVLCPEGALSEFASKFGRGRAIPRWMRWGGWPFVAFGLTTIYGQMVSVYQYPRAVLLVLGGSTLAAIVIGFL
YGREKRVWCRYLCPVNGVFSLLARLSPLRYKVDEDAWRRSYRKGEDGHRVIPINCAPLVPLRNMKGAAACHMCGRCSGHR
GAIELTARSPSEEVVALGDRQASSWDTALILYGLLGIAIGAFHWTVSPWFVQIKQTLAGWLIDHDIMWPLDTNAPWFIFT
HYPEHNDVFSWLDGSLVIAYIVGTGLAYGTALAVLLAGAAAMLGRFERVRLHHLAQALIPLAGAGVFLGLSATTLSLLRA
EHVPLGWAPDVRIAILVGANLWSAWLAWLVTGRYASWPRRLLAMLWFGAALAVVDSAWWLMFWGF

Specific function: Unknown

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51800; Mature: 51669

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure 
SAVAGCRRTSLVAQAGHWMQRHGALIRGIQWVVVLVYAFLILVPAFTPLPDDTAHLWSN
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LTLAAQFVFWGIWWPFVLLSMVMLGRVWCGVLCPEGALSEFASKFGRGRAIPRWMRWGGW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCCC
PFVAFGLTTIYGQMVSVYQYPRAVLLVLGGSTLAAIVIGFLYGREKRVWCRYLCPVNGVF
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHCCHHHHH
SLLARLSPLRYKVDEDAWRRSYRKGEDGHRVIPINCAPLVPLRNMKGAAACHMCGRCSGH
HHHHHHCCCCEECCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCC
RGAIELTARSPSEEVVALGDRQASSWDTALILYGLLGIAIGAFHWTVSPWFVQIKQTLAG
CCEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
WLIDHDIMWPLDTNAPWFIFTHYPEHNDVFSWLDGSLVIAYIVGTGLAYGTALAVLLAGA
HHHCCCEECEECCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AAMLGRFERVRLHHLAQALIPLAGAGVFLGLSATTLSLLRAEHVPLGWAPDVRIAILVGA
HHHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
NLWSAWLAWLVTGRYASWPRRLLAMLWFGAALAVVDSAWWLMFWGF
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA