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The map label for this gene is arrD [H]

Identifier: 126207989

GI number: 126207989

Start: 573751

End: 574293

Strand: Direct

Name: arrD [H]

Synonym: APL_0505

Alternate gene names: 126207989

Gene position: 573751-574293 (Clockwise)

Preceding gene: 126207988

Following gene: 126207990

Centisome position: 25.23

GC content: 43.46

Gene sequence:

>543_bases
ATGAGTAGCAATAAGTGGGGTACACTTGGCAAAGTTGGTGGCGCTTGTTCGGTGCTGACGATGATCGCTATTATGGTTAC
CAATTACGGCGATGAGTTTCGCACAAGCGTTGAAGGTTTAGAAATTATCGGGAATGCCGAAGGTTGCCGTCGTGAGCCTT
ATAAATGCCCAGCTGATGTTTTAACGGTCGGTGTAGGCAGTACGGCAGCAGGTGGCGAACTTATTGAAGCAAATAAGATT
TATTCTGATGATGAAATTGCTCGTCGCTGGAAGAATGATGTTGTGATTGCTGAACGTTGTGTCAATCGGTTAGCAAACGG
TAAGCAAATGCCACAATCTGTTTTTGACTCAGTAGTATCAATTACTTTCAATGTGGGTTGTGGAGCATTATCAAAATCTA
CTTTATTTCGTAAGGCTAATGCCCAAGACTGGCAAGGCGTATGTAATGAATTACCACGCTGGGTATATTCAGGCGGTCGT
AAGTTGAAAGGCTTAATGCTTCGCCGAGAAAAAGAAAAGGCATTGTGTTTGTCAGGTTTGTAG

Upstream 100 bases:

>100_bases
TTCGAAAAATATCAATTGCGAAAGATTAAACGCCGAGAAGAAGAACGAGCTGAGCAGATTCATCAGTTAAAAGTGAAACG
TTTAGAAAAGGGGCTTAGCG

Downstream 100 bases:

>100_bases
GATTGGCGGTGCGGTTATGGGACTAAGTAATTTAGGTGGCGAAAGCGTAAACAGAAGAGCCTAAACCGCACCGCTATTTA
AGGTGGTGTTTATGTTAGAT

Product: putative endolysin

Products: NA

Alternate protein names: Endolysin; Lysis protein; Muramidase [H]

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MSSNKWGTLGKVGGACSVLTMIAIMVTNYGDEFRTSVEGLEIIGNAEGCRREPYKCPADVLTVGVGSTAAGGELIEANKI
YSDDEIARRWKNDVVIAERCVNRLANGKQMPQSVFDSVVSITFNVGCGALSKSTLFRKANAQDWQGVCNELPRWVYSGGR
KLKGLMLRREKEKALCLSGL

Sequences:

>Translated_180_residues
MSSNKWGTLGKVGGACSVLTMIAIMVTNYGDEFRTSVEGLEIIGNAEGCRREPYKCPADVLTVGVGSTAAGGELIEANKI
YSDDEIARRWKNDVVIAERCVNRLANGKQMPQSVFDSVVSITFNVGCGALSKSTLFRKANAQDWQGVCNELPRWVYSGGR
KLKGLMLRREKEKALCLSGL
>Mature_179_residues
SSNKWGTLGKVGGACSVLTMIAIMVTNYGDEFRTSVEGLEIIGNAEGCRREPYKCPADVLTVGVGSTAAGGELIEANKIY
SDDEIARRWKNDVVIAERCVNRLANGKQMPQSVFDSVVSITFNVGCGALSKSTLFRKANAQDWQGVCNELPRWVYSGGRK
LKGLMLRREKEKALCLSGL

Specific function: Essential for lysis of bacterial cell wall, by showing cell wall hydrolyzing activity [H]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 24 family [H]

Homologues:

Organism=Escherichia coli, GI1786768, Length=133, Percent_Identity=37.593984962406, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002196 [H]

Pfam domain/function: PF00959 Phage_lysozyme [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 19571; Mature: 19440

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNKWGTLGKVGGACSVLTMIAIMVTNYGDEFRTSVEGLEIIGNAEGCRREPYKCPADV
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
LTVGVGSTAAGGELIEANKIYSDDEIARRWKNDVVIAERCVNRLANGKQMPQSVFDSVVS
HEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
ITFNVGCGALSKSTLFRKANAQDWQGVCNELPRWVYSGGRKLKGLMLRREKEKALCLSGL
HHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSNKWGTLGKVGGACSVLTMIAIMVTNYGDEFRTSVEGLEIIGNAEGCRREPYKCPADV
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
LTVGVGSTAAGGELIEANKIYSDDEIARRWKNDVVIAERCVNRLANGKQMPQSVFDSVVS
HEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
ITFNVGCGALSKSTLFRKANAQDWQGVCNELPRWVYSGGRKLKGLMLRREKEKALCLSGL
HHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]