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The map label for this gene is rarA [H]

Identifier: 126207922

GI number: 126207922

Start: 494439

End: 495779

Strand: Direct

Name: rarA [H]

Synonym: APL_0438

Alternate gene names: 126207922

Gene position: 494439-495779 (Clockwise)

Preceding gene: 126207921

Following gene: 126207923

Centisome position: 21.74

GC content: 45.56

Gene sequence:

>1341_bases
ATGAGTAGTTTGTCCTTTGATTTTTCAGAAGATTTTAGACCGCTGCCCGCCAGAATGCGTCCACGCACACTGGCGGAGTA
TATCGGGCAAGCTCATCTTATCGAAGAAGGTAAACCGCTACGCCGCGCGATAGAAGCGGGACATTCCCATTCCATGATCT
TCTGGGGGCCTCCCGGTACCGGTAAAACGACATTAGCGGAAATTATCGCGCATCATTTTGATGCGGAAGTGGAACGCCTT
TCTGCGGTTACCAGCGGTGTGAAAGAAATCAGAGAAGCGATAGAGCGGGCTAAGCTCAATCGACAAACCGGCAGACGAAC
ATTACTTTTTGTCGATGAAGTACACCGTTTTAATAAAAGCCAACAAGACGCTTTTCTGCCGCATATTGAAGACGGCACCA
TTATTTTTATCGGTGCGACAACCGAGAATCCATCCTTTGAATTAAATAACGCCTTACTTTCCCGTGCGAAAATCTATATT
TTAAAACCGTTGCAAGCGGTTGAAATTGCACAAGTTTTAACTAATGCGCTTTACGATAAAGAACGAGGCTTAGGTAATGA
AAGCTATTACATCGAAGATAATGTGATTGAATTACTCGCCGATTATGTAAATGGAGATGCAAGATTTGCCTTAAATTGCT
TAGAGTTAATGTCGGATATGGCGGAAATATCCTCTCAAGGAAAACGTCTGAATAAAGCGTTATTGGCTGAAGTTTTAGGA
GAGCGACAAGCGCGCTTTGATAAAGGCGGCGATCGTTACTATGATTTAATCTCGGCATTGCATAAGTCGGTACGGGGCTC
ATCACCGGACGGGGCGTTGTATTGGTATGCGAGAATTTTAACCGCAGGCGGAGATCCTTTGTATGTTGCGCGCCGATTAC
TGGCAATCGCTTCGGAAGATATTGGCAATGCTGACCCTAGAGCGATGCAAGTTGCGATTAACGCTTGGGATTGCTATACC
CGAGTCGGGGCTTACGAAGGTGAAAGAGCGATTGCGCAAGCGGTGATTTATTTGGCGGTTGCGCCAAAAAGCAATGCGGT
TTATAACGCTTTCAATGAAGCGAAACGTCTTGCGAAAGAGGGCAAAGATTACGATGTACCGGAACATCTGCGCAATGCAC
CGACTAAGTTGATGAAATCGTTAGGTTACGGTGAAGAATATCGTTACGCACATCATGAACCGAACGCTTATGCCGCCGGC
GAAAACTACTTCCCGCCGGAATTAAAAGATACGGTATTTTATCACCCGACGGAACGGGGAATGGAAAAACAAATTAAGGA
AAAATTGCAGTGGCTTAATGCACAGGATCAAGCCAGCTTACAACAACGTTACAAGCGGTAA

Upstream 100 bases:

>100_bases
AATTTTAGGTGCGATAATCAGTGGGATTTTATGGCCATGGATCTTCTTACTGATGCGCCAAATTCGCCGTCAGCTCAGAT
TACGTTAGTGAGGTATGGCT

Downstream 100 bases:

>100_bases
TATTTTAAACTTTTTTTGCAAAATTTTAGAGAAATCCGACCGCTTGTACTGCATTGAAAAATAAAAAGATAGAGAGAGAA
ATGTTTGAGATTCTATTCCC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MSSLSFDFSEDFRPLPARMRPRTLAEYIGQAHLIEEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVERL
SAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYI
LKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISSQGKRLNKALLAEVLG
ERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVAINAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRLAKEGKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAG
ENYFPPELKDTVFYHPTERGMEKQIKEKLQWLNAQDQASLQQRYKR

Sequences:

>Translated_446_residues
MSSLSFDFSEDFRPLPARMRPRTLAEYIGQAHLIEEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVERL
SAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYI
LKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISSQGKRLNKALLAEVLG
ERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVAINAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRLAKEGKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAG
ENYFPPELKDTVFYHPTERGMEKQIKEKLQWLNAQDQASLQQRYKR
>Mature_445_residues
SSLSFDFSEDFRPLPARMRPRTLAEYIGQAHLIEEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVERLS
AVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYIL
KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISSQGKRLNKALLAEVLGE
RQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVAINAWDCYTR
VGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRLAKEGKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAGE
NYFPPELKDTVFYHPTERGMEKQIKEKLQWLNAQDQASLQQRYKR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=41.7233560090703, Blast_Score=313, Evalue=2e-85,
Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=37.4149659863946, Blast_Score=256, Evalue=3e-68,
Organism=Escherichia coli, GI1787119, Length=447, Percent_Identity=71.8120805369127, Blast_Score=659, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6324111, Length=436, Percent_Identity=40.1376146788991, Blast_Score=296, Evalue=4e-81,
Organism=Saccharomyces cerevisiae, GI6324039, Length=223, Percent_Identity=28.2511210762332, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 50305; Mature: 50174

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLSFDFSEDFRPLPARMRPRTLAEYIGQAHLIEEGKPLRRAIEAGHSHSMIFWGPPGT
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHCCCHHHHHHHCCCCCCEEEECCCCC
GKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCC
QQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK
CCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHH
ERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISSQGKRLNKALLAEVLG
HCCCCCCCEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASED
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
IGNADPRAMQVAINAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRLAKE
CCCCCCCEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHC
GKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAGENYFPPELKDTVFYHPTERG
CCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCEECCCCCCCCCCCCCEEECCCHHH
MEKQIKEKLQWLNAQDQASLQQRYKR
HHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SSLSFDFSEDFRPLPARMRPRTLAEYIGQAHLIEEGKPLRRAIEAGHSHSMIFWGPPGT
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHCCCHHHHHHHCCCCCCEEEECCCCC
GKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCC
QQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK
CCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHH
ERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISSQGKRLNKALLAEVLG
HCCCCCCCEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASED
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
IGNADPRAMQVAINAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRLAKE
CCCCCCCEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHC
GKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAGENYFPPELKDTVFYHPTERG
CCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCEECCCCCCCCCCCCCEEECCCHHH
MEKQIKEKLQWLNAQDQASLQQRYKR
HHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]