Click here to switch to the map view.

The map label for this gene is kpsF [C]

Identifier: 126207871

GI number: 126207871

Start: 440036

End: 440971

Strand: Reverse

Name: kpsF [C]

Synonym: APL_0387

Alternate gene names: 126207871

Gene position: 440971-440036 (Counterclockwise)

Preceding gene: 126207872

Following gene: 126207870

Centisome position: 19.39

GC content: 44.87

Gene sequence:

>936_bases
ATGAATTACTTAGCGAGTGCAAACGAAACTCTCAGCCTTTACGCCCAAGCAATTAGCCAGCTTAATCAACGTTTAGACGG
CGCATTTAATCAAGCGGTCGAAATGGTTTTAAACTGTGAAGGACGCGTCGTGGTTGCGGGTATCGGTAAATCCGGTTTAG
TCGGACAAAAAATGGTCGCGACGTTTGCTTCAACCGGCACACCGAGTTTTTATTTACATCCGACCGAAGCCTTCCACGGC
GATTTAGGGATGTTAAAACCGATTGATGTGGTGATTCTTATTTCCAACAGCGGAGAAACCGATGATGTAATTAAATTATT
ACCCAGCCTAAAAAGTTTCGGTAATAAAATTATTGCGATGACCGGCAATCCGAATTCAACTCTTGCTCAACACGCCAATT
TAATTCTCAATATCGGTGTTGAGCGAGAAGCCTGCCCGAATAATCTTGCCCCTACTACATCGACACTAGTAACGATGGCG
CTCGGCGATGCGTTGGCGATTGCATTAATCAACGCACGTGACTTCAAAGCGGAAGATTTTGCCCGCTTCCACCCGGGCGG
TAGCTTAGGACGTAAATTGCTCAATCGCGTGAAAGACGTGATGCAAACTAAGTTGCCGATCGCCCAACCGAATGCGGATT
TCAGTACGATTCTAAGTGTGATGAATGAAGGCAGAATGGGCGTGGCATTAATTATGCAAGGCGAACAATTACAAGGCATT
ATCACTGACGGCGATATTCGTCGTACGTTAGCGCAATTCGGTACGGACAGTTTAGCGAAAACAGCGGAACAAATTATGTC
GAAACATCCGAAAACCGTTTCGGACAATACTTATTTGGCGAAAGCGGAAGAAATGATGAAAGAATTGCATATCCATTCGC
TTATTGCGCTGAACGACGAAGGCAAAGTGTCCGGTATTATGGAATTATCAAGTTAA

Upstream 100 bases:

>100_bases
AACCGCTTGTTCCGCTAAAGTTCGCGTAAAACAAGCGGTTTTATTTTGCTTTGTGTATAATATTGCGAATTGACTTCTAT
TTTGCCATTTAGGAACAAAT

Downstream 100 bases:

>100_bases
GGATGTTTTGTGGCAAAATCAAATTATATTACGCGTAGCGGATGGCAAGCCTTAGATCAAGAACTTAAATTCTTGTGGAA
AGACGAACGCCCGAAAGTAA

Product: arabinose-5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MNYLASANETLSLYAQAISQLNQRLDGAFNQAVEMVLNCEGRVVVAGIGKSGLVGQKMVATFASTGTPSFYLHPTEAFHG
DLGMLKPIDVVILISNSGETDDVIKLLPSLKSFGNKIIAMTGNPNSTLAQHANLILNIGVEREACPNNLAPTTSTLVTMA
LGDALAIALINARDFKAEDFARFHPGGSLGRKLLNRVKDVMQTKLPIAQPNADFSTILSVMNEGRMGVALIMQGEQLQGI
ITDGDIRRTLAQFGTDSLAKTAEQIMSKHPKTVSDNTYLAKAEEMMKELHIHSLIALNDEGKVSGIMELSS

Sequences:

>Translated_311_residues
MNYLASANETLSLYAQAISQLNQRLDGAFNQAVEMVLNCEGRVVVAGIGKSGLVGQKMVATFASTGTPSFYLHPTEAFHG
DLGMLKPIDVVILISNSGETDDVIKLLPSLKSFGNKIIAMTGNPNSTLAQHANLILNIGVEREACPNNLAPTTSTLVTMA
LGDALAIALINARDFKAEDFARFHPGGSLGRKLLNRVKDVMQTKLPIAQPNADFSTILSVMNEGRMGVALIMQGEQLQGI
ITDGDIRRTLAQFGTDSLAKTAEQIMSKHPKTVSDNTYLAKAEEMMKELHIHSLIALNDEGKVSGIMELSS
>Mature_311_residues
MNYLASANETLSLYAQAISQLNQRLDGAFNQAVEMVLNCEGRVVVAGIGKSGLVGQKMVATFASTGTPSFYLHPTEAFHG
DLGMLKPIDVVILISNSGETDDVIKLLPSLKSFGNKIIAMTGNPNSTLAQHANLILNIGVEREACPNNLAPTTSTLVTMA
LGDALAIALINARDFKAEDFARFHPGGSLGRKLLNRVKDVMQTKLPIAQPNADFSTILSVMNEGRMGVALIMQGEQLQGI
ITDGDIRRTLAQFGTDSLAKTAEQIMSKHPKTVSDNTYLAKAEEMMKELHIHSLIALNDEGKVSGIMELSS

Specific function: Unknown

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=297, Percent_Identity=43.0976430976431, Blast_Score=245, Evalue=2e-66,
Organism=Escherichia coli, GI87082151, Length=309, Percent_Identity=41.4239482200647, Blast_Score=239, Evalue=2e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 33368; Mature: 33368

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYLASANETLSLYAQAISQLNQRLDGAFNQAVEMVLNCEGRVVVAGIGKSGLVGQKMVA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
TFASTGTPSFYLHPTEAFHGDLGMLKPIDVVILISNSGETDDVIKLLPSLKSFGNKIIAM
HHHCCCCCEEEECCCHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCEEEEE
TGNPNSTLAQHANLILNIGVEREACPNNLAPTTSTLVTMALGDALAIALINARDFKAEDF
ECCCCHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCHHHH
ARFHPGGSLGRKLLNRVKDVMQTKLPIAQPNADFSTILSVMNEGRMGVALIMQGEQLQGI
HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCHHEEE
ITDGDIRRTLAQFGTDSLAKTAEQIMSKHPKTVSDNTYLAKAEEMMKELHIHSLIALNDE
ECCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEEEECCC
GKVSGIMELSS
CCEEEEEEECC
>Mature Secondary Structure
MNYLASANETLSLYAQAISQLNQRLDGAFNQAVEMVLNCEGRVVVAGIGKSGLVGQKMVA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
TFASTGTPSFYLHPTEAFHGDLGMLKPIDVVILISNSGETDDVIKLLPSLKSFGNKIIAM
HHHCCCCCEEEECCCHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCEEEEE
TGNPNSTLAQHANLILNIGVEREACPNNLAPTTSTLVTMALGDALAIALINARDFKAEDF
ECCCCHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCHHHH
ARFHPGGSLGRKLLNRVKDVMQTKLPIAQPNADFSTILSVMNEGRMGVALIMQGEQLQGI
HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCHHEEE
ITDGDIRRTLAQFGTDSLAKTAEQIMSKHPKTVSDNTYLAKAEEMMKELHIHSLIALNDE
ECCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEEEECCC
GKVSGIMELSS
CCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]