Click here to switch to the map view.

The map label for this gene is ycdY [C]

Identifier: 126207841

GI number: 126207841

Start: 399573

End: 400142

Strand: Reverse

Name: ycdY [C]

Synonym: APL_0357

Alternate gene names: 126207841

Gene position: 400142-399573 (Counterclockwise)

Preceding gene: 126207844

Following gene: 126207840

Centisome position: 17.59

GC content: 45.09

Gene sequence:

>570_bases
ATGAGCGAAACAACCATTAACGATTTCTCACTTCTCTGCCGTTTATTCGGCAATTTATTCTACCGTTCTCCGACCGATCC
GATTCTTGCCGGCACCTTTGCTTGGCTTGCACAAGGCGGTTTACGTCGGCAATGGGCGTTATCCACCGATGCACAAAGCG
AATCGGCTTTAACGGTGTTAGAAAAAAATGCTAACCCTACGCAATTACAAGCAAGCTATCAAGCACTTTTTGGCGAGGAT
GGAGCTATTGCTACAACAATTTCCGCCTATAACATTTCGGTCGAAGACTTTATCAACTTCCGCCGAACACGCGCAATGCC
GGAATTAGAAAAGCCTGACCATGTTGCGCTTTTATTACTGACCGCTTCTTGGATTGAAGATAATTTAGATTCGGATGCCG
CACAACAAGCCTTTTTCGAGCAATTTCTATTACCTTGCTCCGCTAAATTTTTAGGTCAAATCGAAGCACACGATAACGGA
TTTTATAAAGCACTCGCACAACTTTGTCGTGATGCGCTCGGCGCAATGGCGGACGAATTGGAAGAATTATCCGAAGCGGA
AGTCGAATAA

Upstream 100 bases:

>100_bases
CCACACCGCCCGAAGCACTCACGTGCGCACCAATATATTTCATCTTCTTATCCTATTCGTGTAAAATGACTAACTTCTTA
ACCTTTATAAATCATTACTT

Downstream 100 bases:

>100_bases
TACTATTGATTTAAGCTCTTTGAGTGATAAACTCAGAGCGCTTAATTTTTAAGCGCAATAGGAGGCTAAAATGAAAAAGG
CAACATGGACGATCGCAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSETTINDFSLLCRLFGNLFYRSPTDPILAGTFAWLAQGGLRRQWALSTDAQSESALTVLEKNANPTQLQASYQALFGED
GAIATTISAYNISVEDFINFRRTRAMPELEKPDHVALLLLTASWIEDNLDSDAAQQAFFEQFLLPCSAKFLGQIEAHDNG
FYKALAQLCRDALGAMADELEELSEAEVE

Sequences:

>Translated_189_residues
MSETTINDFSLLCRLFGNLFYRSPTDPILAGTFAWLAQGGLRRQWALSTDAQSESALTVLEKNANPTQLQASYQALFGED
GAIATTISAYNISVEDFINFRRTRAMPELEKPDHVALLLLTASWIEDNLDSDAAQQAFFEQFLLPCSAKFLGQIEAHDNG
FYKALAQLCRDALGAMADELEELSEAEVE
>Mature_188_residues
SETTINDFSLLCRLFGNLFYRSPTDPILAGTFAWLAQGGLRRQWALSTDAQSESALTVLEKNANPTQLQASYQALFGEDG
AIATTISAYNISVEDFINFRRTRAMPELEKPDHVALLLLTASWIEDNLDSDAAQQAFFEQFLLPCSAKFLGQIEAHDNGF
YKALAQLCRDALGAMADELEELSEAEVE

Specific function: Unknown

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family [H]

Homologues:

Organism=Escherichia coli, GI1787272, Length=187, Percent_Identity=40.6417112299465, Blast_Score=130, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009073 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20937; Mature: 20805

Theoretical pI: Translated: 4.03; Mature: 4.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETTINDFSLLCRLFGNLFYRSPTDPILAGTFAWLAQGGLRRQWALSTDAQSESALTVL
CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHH
EKNANPTQLQASYQALFGEDGAIATTISAYNISVEDFINFRRTRAMPELEKPDHVALLLL
CCCCCCHHHHHHHHHHHCCCCCEEEEEEHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
TASWIEDNLDSDAAQQAFFEQFLLPCSAKFLGQIEAHDNGFYKALAQLCRDALGAMADEL
HHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EELSEAEVE
HHHHHHCCC
>Mature Secondary Structure 
SETTINDFSLLCRLFGNLFYRSPTDPILAGTFAWLAQGGLRRQWALSTDAQSESALTVL
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHH
EKNANPTQLQASYQALFGEDGAIATTISAYNISVEDFINFRRTRAMPELEKPDHVALLLL
CCCCCCHHHHHHHHHHHCCCCCEEEEEEHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
TASWIEDNLDSDAAQQAFFEQFLLPCSAKFLGQIEAHDNGFYKALAQLCRDALGAMADEL
HHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EELSEAEVE
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]