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The map label for this gene is palA [H]

Identifier: 126207788

GI number: 126207788

Start: 336904

End: 337374

Strand: Direct

Name: palA [H]

Synonym: APL_0304

Alternate gene names: 126207788

Gene position: 336904-337374 (Clockwise)

Preceding gene: 126207787

Following gene: 126207789

Centisome position: 14.81

GC content: 43.74

Gene sequence:

>471_bases
ATGAAAAAACTAGCTAAAGTATTGATGATTGCGGCACCAGCATTCGTATTAGCAGCTTGCAGCAGCTCATCAGACAATGC
TAACGCAAATGCTAACGCAAATGCTAACGCAAACGCAGGTCAATTCGGCGGTATGACTGCTGAAGACTTACAAACTCGTT
ACAACACTGTGTACTTCGGTTTCGATAGCTACGCAGTTGAAGGTGAGTACCAACAACTTTTAGATGCACACGCTGCATAC
TTAACATCTGCAAACGGTAAAGTAACTGTTGCTGGTCACGCTGACGAACGTGGTACTCCAGAGTACAACATCGCATTAGG
TCAACGTCGTGCAGACGCAGTTAAAAACTACTTAGCAACTAAAGGTGCTAACCAAGTTTCAACTGTTTCTTACGGTGAAG
AAAAACCGGCTGTGTTAGGTCACACTGAAGCTGACTACGCTAAAAACCGTCGTGCAGTATTAGAATACTAA

Upstream 100 bases:

>100_bases
CGTTTCAAAGCTAACTTGCCGGGAGCAGGTGGACAATTTAAGTTTCCTGCTTGGTCACCGTATTTGACTAAATAAAATAA
AATTCTTTTAGGAGCAACAA

Downstream 100 bases:

>100_bases
TTTGTATTTAGTTACTGAATAGACAATGAAGCCCTGATTTTTCAGGGCTTTATTTCTTTATAAGCGGTTAAATTTTCACA
TTTATCTGTAATTATAATGA

Product: outer membrane protein precursor PalA

Products: NA

Alternate protein names: OMP P6; P6-like; Peptidoglycan-associated lipoprotein [H]

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MKKLAKVLMIAAPAFVLAACSSSSDNANANANANANANAGQFGGMTAEDLQTRYNTVYFGFDSYAVEGEYQQLLDAHAAY
LTSANGKVTVAGHADERGTPEYNIALGQRRADAVKNYLATKGANQVSTVSYGEEKPAVLGHTEADYAKNRRAVLEY

Sequences:

>Translated_156_residues
MKKLAKVLMIAAPAFVLAACSSSSDNANANANANANANAGQFGGMTAEDLQTRYNTVYFGFDSYAVEGEYQQLLDAHAAY
LTSANGKVTVAGHADERGTPEYNIALGQRRADAVKNYLATKGANQVSTVSYGEEKPAVLGHTEADYAKNRRAVLEY
>Mature_156_residues
MKKLAKVLMIAAPAFVLAACSSSSDNANANANANANANAGQFGGMTAEDLQTRYNTVYFGFDSYAVEGEYQQLLDAHAAY
LTSANGKVTVAGHADERGTPEYNIALGQRRADAVKNYLATKGANQVSTVSYGEEKPAVLGHTEADYAKNRRAVLEY

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=172, Percent_Identity=51.7441860465116, Blast_Score=156, Evalue=5e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 16605; Mature: 16605

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLAKVLMIAAPAFVLAACSSSSDNANANANANANANAGQFGGMTAEDLQTRYNTVYFG
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCEEEEC
FDSYAVEGEYQQLLDAHAAYLTSANGKVTVAGHADERGTPEYNIALGQRRADAVKNYLAT
CCCEEECCHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHH
KGANQVSTVSYGEEKPAVLGHTEADYAKNRRAVLEY
CCCCCEEEECCCCCCCCEECCCCHHHHHCCEEECCC
>Mature Secondary Structure
MKKLAKVLMIAAPAFVLAACSSSSDNANANANANANANAGQFGGMTAEDLQTRYNTVYFG
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCEEEEC
FDSYAVEGEYQQLLDAHAAYLTSANGKVTVAGHADERGTPEYNIALGQRRADAVKNYLAT
CCCEEECCHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHH
KGANQVSTVSYGEEKPAVLGHTEADYAKNRRAVLEY
CCCCCEEEECCCCCCCCEECCCCHHHHHCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7868272; 11248100 [H]