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The map label for this gene is ycfH [C]

Identifier: 126207766

GI number: 126207766

Start: 306917

End: 307669

Strand: Direct

Name: ycfH [C]

Synonym: APL_0278

Alternate gene names: 126207766

Gene position: 306917-307669 (Clockwise)

Preceding gene: 126207765

Following gene: 126207768

Centisome position: 13.49

GC content: 38.78

Gene sequence:

>753_bases
ATGTTTGATAGCCATATTCATTTAGATCAACTCGATTCAAACCAAATAGATCGAATTGTTCGCGATCCTTTATTGCAAAG
CGTATTAGCGGTCAGTACCGATTTAGCCAGTGCGGAAAGGTTACTCGCATTAAAACGGGTGTTTCCGAAAATTCAAATGG
CAGCGGGATTTCATCCTGAGCAGACGTTAATTGATGATAAACAGCAACAAATGTTATTTGATTGGATCGTAAAAAATCGA
GCGAATTTGACCGCTATCGGTGAAGTGGGCTTACCGAATTATCTAAAACGACAGAATCCTAAGTTGGATTATCAGCCTTA
TCTTGCTTTATTGGAGCAGTTTGTTGTGTTAAGCAAGCGGTTAAATTTGCCGTTAAATTTGCATATCGTGCATGATGATG
TTGCGATAACGCTGGATTTGCTGGAAAAATACCAAATTCAACAGGCGCATTTCCATTGGTTTAAAACCGATGATGATTCG
CTTGAACGTTTTCTTCGTACCCCTTATTTCGCTAGTGTTACACCGGATATTTTATGGAATCCGAAAACGCAAAAAATTGT
GCGAAATTTACCGCTTGATCGTTTATTAATTGAAACCGATAGCCCGTGGCGACACGAAAGTTTGGAAAATGCGAGTATTT
CACAGCAATTACAAGCAATATTGACACAATTAGCGAAATTAAGAGTAGAGTCAGAGAGCATGATTCGCTCGCAAATTAGG
CGGAATTATCAGCAGTTATATGGGATAATATAA

Upstream 100 bases:

>100_bases
AAGTGATTTTTGATACGTTACAGCATAGCTAAGTGACAAGCGGTCGAATTTACAGCATTTTTTGTAAATTCGACCGCTTG
TAAATAGAGATGAGAAAGAG

Downstream 100 bases:

>100_bases
AGCCAAGGAATGTTTGGACTGCACAGAAAAAGCGGAGCGGTTTTGTTTAGGTAGGGGCGAATAGTATTCGCTCGAATAAT
TCACTATTAATAAGGGCTAA

Product: putative Mg-dependent deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MFDSHIHLDQLDSNQIDRIVRDPLLQSVLAVSTDLASAERLLALKRVFPKIQMAAGFHPEQTLIDDKQQQMLFDWIVKNR
ANLTAIGEVGLPNYLKRQNPKLDYQPYLALLEQFVVLSKRLNLPLNLHIVHDDVAITLDLLEKYQIQQAHFHWFKTDDDS
LERFLRTPYFASVTPDILWNPKTQKIVRNLPLDRLLIETDSPWRHESLENASISQQLQAILTQLAKLRVESESMIRSQIR
RNYQQLYGII

Sequences:

>Translated_250_residues
MFDSHIHLDQLDSNQIDRIVRDPLLQSVLAVSTDLASAERLLALKRVFPKIQMAAGFHPEQTLIDDKQQQMLFDWIVKNR
ANLTAIGEVGLPNYLKRQNPKLDYQPYLALLEQFVVLSKRLNLPLNLHIVHDDVAITLDLLEKYQIQQAHFHWFKTDDDS
LERFLRTPYFASVTPDILWNPKTQKIVRNLPLDRLLIETDSPWRHESLENASISQQLQAILTQLAKLRVESESMIRSQIR
RNYQQLYGII
>Mature_250_residues
MFDSHIHLDQLDSNQIDRIVRDPLLQSVLAVSTDLASAERLLALKRVFPKIQMAAGFHPEQTLIDDKQQQMLFDWIVKNR
ANLTAIGEVGLPNYLKRQNPKLDYQPYLALLEQFVVLSKRLNLPLNLHIVHDDVAITLDLLEKYQIQQAHFHWFKTDDDS
LERFLRTPYFASVTPDILWNPKTQKIVRNLPLDRLLIETDSPWRHESLENASISQQLQAILTQLAKLRVESESMIRSQIR
RNYQQLYGII

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=157, Percent_Identity=31.8471337579618, Blast_Score=68, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29199; Mature: 29199

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDSHIHLDQLDSNQIDRIVRDPLLQSVLAVSTDLASAERLLALKRVFPKIQMAAGFHPE
CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QTLIDDKQQQMLFDWIVKNRANLTAIGEVGLPNYLKRQNPKLDYQPYLALLEQFVVLSKR
HHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LNLPLNLHIVHDDVAITLDLLEKYQIQQAHFHWFKTDDDSLERFLRTPYFASVTPDILWN
CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCCCCCCCCCCEEC
PKTQKIVRNLPLDRLLIETDSPWRHESLENASISQQLQAILTQLAKLRVESESMIRSQIR
CHHHHHHHHCCHHHEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
RNYQQLYGII
HHHHHHHCCC
>Mature Secondary Structure
MFDSHIHLDQLDSNQIDRIVRDPLLQSVLAVSTDLASAERLLALKRVFPKIQMAAGFHPE
CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QTLIDDKQQQMLFDWIVKNRANLTAIGEVGLPNYLKRQNPKLDYQPYLALLEQFVVLSKR
HHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LNLPLNLHIVHDDVAITLDLLEKYQIQQAHFHWFKTDDDSLERFLRTPYFASVTPDILWN
CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCCCCCCCCCCEEC
PKTQKIVRNLPLDRLLIETDSPWRHESLENASISQQLQAILTQLAKLRVESESMIRSQIR
CHHHHHHHHCCHHHEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
RNYQQLYGII
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]