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The map label for this gene is frpB [H]

Identifier: 126207764

GI number: 126207764

Start: 302893

End: 304863

Strand: Direct

Name: frpB [H]

Synonym: APL_0276

Alternate gene names: 126207764

Gene position: 302893-304863 (Clockwise)

Preceding gene: 126207763

Following gene: 126207765

Centisome position: 13.32

GC content: 42.31

Gene sequence:

>1971_bases
ATGCATAAAAAAACAATATTTAAATTAAGCTTAATTAGTTTAGCCGTCGCCGGCTATGCGGAAGCTAATCAAGCTACACT
TGATACGGTGAAGGTTCAAGCTCAACCTACGGTGAATCATACTAGAAATATCAGTAACCTGCGCGAATTACTGGCTAATC
GTACGGACATTAACGTCGGTGGAGGTAGCGTGTCCGCACAATACATTTCGATTCGCGGATCAGGACAAGATCGTATCGGT
ATGATTGTCGATAATACTTCGACAAATACTCAACAGTGGTATCACCAAGGTCGTTTCCAACTGGATCCGTCTATGGTGAA
ATCGATTAAAATCGATAAGGGCGCCGGTTCCGCCAGTGCCGGTATCGGTATAACGGACGGTGTAATCCGTGCGGAAACGG
TATCGGCAAAAGATTTATTGAAAGACGGCAGATCATTCGGTGCGCGTATCGGTTCCGAATATAACAGTAATCGCGGCATT
AACGATTCGCTTTCACTCTATGGACAAGCGAATAATCTGGATGTATTGCTATTAGGCAGTTGGGGAGACGATAAAAACTA
TAAGGCGGGTAAAGGTTATTCGGATGCGGTGAATAAAAATAGCCGAGTAGTGAATAATACCGCTCGTCGTCAAGGTAATT
ATTTGGCGAAATTCGGCTATGATATTACCGATAAACAGCGTATCGGCTTAAGTTTCCGTCAAGAGTCGTTTTATGGTGCG
GGACAAGATCGTTTCGAGATGATTTTTAATAGCCGCCCGGTAAATGCGAACACGACCAAACGTACCTACAACCTTGAGTA
TGATGCGAAAGACATCGGCTTTGCTCGAGACGTTAAAGCGAATGTGTTCCATATTTTAGGGACGGATAAGCGAGAAGATT
ATCAGCAAAATAAATTAACCGGTTATCAACGTAGTTCTAAAACCAAAACAACGGGGGCTAATTTAGGCTTTACCAGCGAA
TTTGGCGGAGAGCATCTGTTTAAATATGGTGTGAATCTGCGTAAAGAGCAGACAGGTAGTCAGAATTCGTTCGGCAATAT
TAAAGGCGAACAAAAATTCGAATACGGACTATATGCCGAAGGGATTTGGTCTTTAGGTAAAGTGCTGACCTTAACCACAG
GGTTACGTTATGATTACTATGATTTGGATACAGCGGGTAAAGTGGATAAAAACGGTAAACCGCTTGCCGGTAATAAATCG
GTATCCGATAAAAGATTAAATCCGAGTTTCGGATTGATTTGGGACATTACACCGAATTTTGCTTTGAATGCTAAATTAAA
TTATGCAAGTCGCAGCCCTATTTTAGCTTCGGCAAATACCATAACCGATAACCGCGGTTCATTAGATAAAGCCAGAGGCT
TACGTTTTATCGATCCTAAATTGAAAACCGAAGACGTACGTTTGGCGGAAGTCGGTTTTGAATGGAAATATGCCGATTTT
AATTTAAAAGGCAGCGTGTTCGAGCAAAGAGTTAAAAACTTCTATCAAACGACCAACAGTATCATTAGCAATGCGGGAAC
CTTAAAAACGAAAGGTTATGAAGCCGAGTTGGATTATCAATGGAACGCATTAAAATTAACCGCCGGTGTGGCGTATGCCG
ATCCGAAAGCGGACTTTGCGCTTTCTAATGATCCGCTGAATGTTATTCCGCAAGGTCGTCAATGGAGTACCGGTGTTTCG
TATAAATTTGTTGAACCGAATTTAGAGATCGGTTGGTTAGGTCGCTATGCTCAGTCTAAAGAGTATAAAACGGGCGCTGC
GCCGAAAGTCGAAACGAGAAGACGTATCGGATACGGCGTACATGATATTTTCGTAAACTGGCAGCCGCTTAATCAAGACA
ACTTCAATGTGAATTTCACGGTAAAAAACATCGGTAATAAATTCTATCGTAGTCACAGCCAAAGAAATCTTGAAGTCACG
CCGCCAAGCCCGGGACGTGAGTTTAAAATCGGTATGAACTATAGTTTCTAA

Upstream 100 bases:

>100_bases
TATAAGCGAGATAATATCTCGCTTTTTTTATGCGTAAAATAAATTGAAATGACAATTGTTTTTATTTAAACTTAAGACCT
TTTTTAAAAGGAGACTCATA

Downstream 100 bases:

>100_bases
TGGCGGTTTAACCGAATAATTTTGCAAAAGCGGTTGTTTTTACGACCGCTTTTTGTTTATGCACGGCAGGCTTTGAGAGG
GAAGTACACTAATGATTAAA

Product: iron-regulated outer membrane protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 656; Mature: 656

Protein sequence:

>656_residues
MHKKTIFKLSLISLAVAGYAEANQATLDTVKVQAQPTVNHTRNISNLRELLANRTDINVGGGSVSAQYISIRGSGQDRIG
MIVDNTSTNTQQWYHQGRFQLDPSMVKSIKIDKGAGSASAGIGITDGVIRAETVSAKDLLKDGRSFGARIGSEYNSNRGI
NDSLSLYGQANNLDVLLLGSWGDDKNYKAGKGYSDAVNKNSRVVNNTARRQGNYLAKFGYDITDKQRIGLSFRQESFYGA
GQDRFEMIFNSRPVNANTTKRTYNLEYDAKDIGFARDVKANVFHILGTDKREDYQQNKLTGYQRSSKTKTTGANLGFTSE
FGGEHLFKYGVNLRKEQTGSQNSFGNIKGEQKFEYGLYAEGIWSLGKVLTLTTGLRYDYYDLDTAGKVDKNGKPLAGNKS
VSDKRLNPSFGLIWDITPNFALNAKLNYASRSPILASANTITDNRGSLDKARGLRFIDPKLKTEDVRLAEVGFEWKYADF
NLKGSVFEQRVKNFYQTTNSIISNAGTLKTKGYEAELDYQWNALKLTAGVAYADPKADFALSNDPLNVIPQGRQWSTGVS
YKFVEPNLEIGWLGRYAQSKEYKTGAAPKVETRRRIGYGVHDIFVNWQPLNQDNFNVNFTVKNIGNKFYRSHSQRNLEVT
PPSPGREFKIGMNYSF

Sequences:

>Translated_656_residues
MHKKTIFKLSLISLAVAGYAEANQATLDTVKVQAQPTVNHTRNISNLRELLANRTDINVGGGSVSAQYISIRGSGQDRIG
MIVDNTSTNTQQWYHQGRFQLDPSMVKSIKIDKGAGSASAGIGITDGVIRAETVSAKDLLKDGRSFGARIGSEYNSNRGI
NDSLSLYGQANNLDVLLLGSWGDDKNYKAGKGYSDAVNKNSRVVNNTARRQGNYLAKFGYDITDKQRIGLSFRQESFYGA
GQDRFEMIFNSRPVNANTTKRTYNLEYDAKDIGFARDVKANVFHILGTDKREDYQQNKLTGYQRSSKTKTTGANLGFTSE
FGGEHLFKYGVNLRKEQTGSQNSFGNIKGEQKFEYGLYAEGIWSLGKVLTLTTGLRYDYYDLDTAGKVDKNGKPLAGNKS
VSDKRLNPSFGLIWDITPNFALNAKLNYASRSPILASANTITDNRGSLDKARGLRFIDPKLKTEDVRLAEVGFEWKYADF
NLKGSVFEQRVKNFYQTTNSIISNAGTLKTKGYEAELDYQWNALKLTAGVAYADPKADFALSNDPLNVIPQGRQWSTGVS
YKFVEPNLEIGWLGRYAQSKEYKTGAAPKVETRRRIGYGVHDIFVNWQPLNQDNFNVNFTVKNIGNKFYRSHSQRNLEVT
PPSPGREFKIGMNYSF
>Mature_656_residues
MHKKTIFKLSLISLAVAGYAEANQATLDTVKVQAQPTVNHTRNISNLRELLANRTDINVGGGSVSAQYISIRGSGQDRIG
MIVDNTSTNTQQWYHQGRFQLDPSMVKSIKIDKGAGSASAGIGITDGVIRAETVSAKDLLKDGRSFGARIGSEYNSNRGI
NDSLSLYGQANNLDVLLLGSWGDDKNYKAGKGYSDAVNKNSRVVNNTARRQGNYLAKFGYDITDKQRIGLSFRQESFYGA
GQDRFEMIFNSRPVNANTTKRTYNLEYDAKDIGFARDVKANVFHILGTDKREDYQQNKLTGYQRSSKTKTTGANLGFTSE
FGGEHLFKYGVNLRKEQTGSQNSFGNIKGEQKFEYGLYAEGIWSLGKVLTLTTGLRYDYYDLDTAGKVDKNGKPLAGNKS
VSDKRLNPSFGLIWDITPNFALNAKLNYASRSPILASANTITDNRGSLDKARGLRFIDPKLKTEDVRLAEVGFEWKYADF
NLKGSVFEQRVKNFYQTTNSIISNAGTLKTKGYEAELDYQWNALKLTAGVAYADPKADFALSNDPLNVIPQGRQWSTGVS
YKFVEPNLEIGWLGRYAQSKEYKTGAAPKVETRRRIGYGVHDIFVNWQPLNQDNFNVNFTVKNIGNKFYRSHSQRNLEVT
PPSPGREFKIGMNYSF

Specific function: Required for utilization of free heme at low concentrations [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR011276
- InterPro:   IPR010949
- InterPro:   IPR010917 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 73127; Mature: 73127

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKKTIFKLSLISLAVAGYAEANQATLDTVKVQAQPTVNHTRNISNLRELLANRTDINVG
CCCCEEEEHHHHHHHHHCCCCCCCEEEEEEEEEECCCCHHHCCHHHHHHHHCCCCEEEEC
GGSVSAQYISIRGSGQDRIGMIVDNTSTNTQQWYHQGRFQLDPSMVKSIKIDKGAGSASA
CCCEEEEEEEEECCCCCEEEEEEECCCCCHHHHHHCCCEEECHHHHHEEEEECCCCCCCC
GIGITDGVIRAETVSAKDLLKDGRSFGARIGSEYNSNRGINDSLSLYGQANNLDVLLLGS
CCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEEEEC
WGDDKNYKAGKGYSDAVNKNSRVVNNTARRQGNYLAKFGYDITDKQRIGLSFRQESFYGA
CCCCCCCCCCCCCHHHCCCCCEEECHHHHHCCCEEEEECCCCCCCHHCCCEEECCCCCCC
GQDRFEMIFNSRPVNANTTKRTYNLEYDAKDIGFARDVKANVFHILGTDKREDYQQNKLT
CCHHHHHEECCCCCCCCCCCEEEEEEECHHHCCCCCCCCCCEEEEECCCCHHHHHHHHCC
GYQRSSKTKTTGANLGFTSEFGGEHLFKYGVNLRKEQTGSQNSFGNIKGEQKFEYGLYAE
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCHH
GIWSLGKVLTLTTGLRYDYYDLDTAGKVDKNGKPLAGNKSVSDKRLNPSFGLIWDITPNF
HHHHHHCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCE
ALNAKLNYASRSPILASANTITDNRGSLDKARGLRFIDPKLKTEDVRLAEVGFEWKYADF
EEEEEECCCCCCCEEEECCEECCCCCCHHHHCCCEEECCCCCCCCEEEEEECCEEEEECC
NLKGSVFEQRVKNFYQTTNSIISNAGTLKTKGYEAELDYQWNALKLTAGVAYADPKADFA
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCEEEEEEEEECEEECCCCCCEE
LSNDPLNVIPQGRQWSTGVSYKFVEPNLEIGWLGRYAQSKEYKTGAAPKVETRRRIGYGV
ECCCCCEECCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCE
HDIFVNWQPLNQDNFNVNFTVKNIGNKFYRSHSQRNLEVTPPSPGREFKIGMNYSF
EEEEEEEEECCCCCCEEEEEEHHCCHHHHHCCCCCCEEECCCCCCCEEEEECCCCC
>Mature Secondary Structure
MHKKTIFKLSLISLAVAGYAEANQATLDTVKVQAQPTVNHTRNISNLRELLANRTDINVG
CCCCEEEEHHHHHHHHHCCCCCCCEEEEEEEEEECCCCHHHCCHHHHHHHHCCCCEEEEC
GGSVSAQYISIRGSGQDRIGMIVDNTSTNTQQWYHQGRFQLDPSMVKSIKIDKGAGSASA
CCCEEEEEEEEECCCCCEEEEEEECCCCCHHHHHHCCCEEECHHHHHEEEEECCCCCCCC
GIGITDGVIRAETVSAKDLLKDGRSFGARIGSEYNSNRGINDSLSLYGQANNLDVLLLGS
CCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEEEEC
WGDDKNYKAGKGYSDAVNKNSRVVNNTARRQGNYLAKFGYDITDKQRIGLSFRQESFYGA
CCCCCCCCCCCCCHHHCCCCCEEECHHHHHCCCEEEEECCCCCCCHHCCCEEECCCCCCC
GQDRFEMIFNSRPVNANTTKRTYNLEYDAKDIGFARDVKANVFHILGTDKREDYQQNKLT
CCHHHHHEECCCCCCCCCCCEEEEEEECHHHCCCCCCCCCCEEEEECCCCHHHHHHHHCC
GYQRSSKTKTTGANLGFTSEFGGEHLFKYGVNLRKEQTGSQNSFGNIKGEQKFEYGLYAE
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCHH
GIWSLGKVLTLTTGLRYDYYDLDTAGKVDKNGKPLAGNKSVSDKRLNPSFGLIWDITPNF
HHHHHHCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCE
ALNAKLNYASRSPILASANTITDNRGSLDKARGLRFIDPKLKTEDVRLAEVGFEWKYADF
EEEEEECCCCCCCEEEECCEECCCCCCHHHHCCCEEECCCCCCCCEEEEEECCEEEEECC
NLKGSVFEQRVKNFYQTTNSIISNAGTLKTKGYEAELDYQWNALKLTAGVAYADPKADFA
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCEEEEEEEEECEEECCCCCCEE
LSNDPLNVIPQGRQWSTGVSYKFVEPNLEIGWLGRYAQSKEYKTGAAPKVETRRRIGYGV
ECCCCCEECCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCE
HDIFVNWQPLNQDNFNVNFTVKNIGNKFYRSHSQRNLEVTPPSPGREFKIGMNYSF
EEEEEEEEECCCCCCEEEEEEHHCCHHHHHCCCCCCEEECCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7751272 [H]