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The map label for this gene is yjgF [C]

Identifier: 126207756

GI number: 126207756

Start: 297183

End: 297545

Strand: Direct

Name: yjgF [C]

Synonym: APL_0268

Alternate gene names: 126207756

Gene position: 297183-297545 (Clockwise)

Preceding gene: 126207755

Following gene: 126207757

Centisome position: 13.07

GC content: 41.87

Gene sequence:

>363_bases
ATGGAAATTATTCTACCGAATCAAAGTAAAGGGCATTATTCTCCGGCAATAAAATCCAACGGAATGTTGTATATATCGGG
ACAACTTCCATTTAATGCTGATGGGAAAATTGTTGGTGATATTGCCGCTCAAACCAAACAAGCTCTCGCTAATTTAGCTC
AAGTACTCGCTGCTGCCGAGCTTAGTAGAAATGATGTGGTGCAATGCCGTGTGTATATTCCCGATGTAGCTTATTGGGAT
ACGGTTAATCAAGTTTATGCTGATTTTTTCGGTTCGCACAAGCCAGCCCGTACCGTTGTACCTTGCGGTAATTTGCATTA
CAACGCACTTATAGAAATTGACGCGGTTGCCGAATTTGCTTAG

Upstream 100 bases:

>100_bases
TGTTTTTAATGAAAGGCAGTATTGAGAAAGCTGCTGAAAAATTAGGCGTAAATAAAGTGACTATTTATAGTTATTTAGAT
GAAGTAAGAGGAAAACGCTA

Downstream 100 bases:

>100_bases
GAGAATCAATATGAAATTTATCTGTAATCAATGCCAACAAATTGCGCCGGTATCTACTCGCCAAGCAAAATGTCAATGCG
GAGGCTTATGGACACTGGAT

Product: putative translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MEIILPNQSKGHYSPAIKSNGMLYISGQLPFNADGKIVGDIAAQTKQALANLAQVLAAAELSRNDVVQCRVYIPDVAYWD
TVNQVYADFFGSHKPARTVVPCGNLHYNALIEIDAVAEFA

Sequences:

>Translated_120_residues
MEIILPNQSKGHYSPAIKSNGMLYISGQLPFNADGKIVGDIAAQTKQALANLAQVLAAAELSRNDVVQCRVYIPDVAYWD
TVNQVYADFFGSHKPARTVVPCGNLHYNALIEIDAVAEFA
>Mature_120_residues
MEIILPNQSKGHYSPAIKSNGMLYISGQLPFNADGKIVGDIAAQTKQALANLAQVLAAAELSRNDVVQCRVYIPDVAYWD
TVNQVYADFFGSHKPARTVVPCGNLHYNALIEIDAVAEFA

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=109, Percent_Identity=37.6146788990826, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87082396, Length=111, Percent_Identity=36.036036036036, Blast_Score=72, Evalue=9e-15,
Organism=Escherichia coli, GI1787245, Length=124, Percent_Identity=30.6451612903226, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI87082213, Length=111, Percent_Identity=32.4324324324324, Blast_Score=67, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71982068, Length=108, Percent_Identity=36.1111111111111, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI25148896, Length=108, Percent_Identity=36.1111111111111, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=108, Percent_Identity=36.1111111111111, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322138, Length=106, Percent_Identity=35.8490566037736, Blast_Score=79, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=35.2941176470588, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13037; Mature: 13037

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIILPNQSKGHYSPAIKSNGMLYISGQLPFNADGKIVGDIAAQTKQALANLAQVLAAAE
CEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
LSRNDVVQCRVYIPDVAYWDTVNQVYADFFGSHKPARTVVPCGNLHYNALIEIDAVAEFA
CCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEEEEECCC
>Mature Secondary Structure
MEIILPNQSKGHYSPAIKSNGMLYISGQLPFNADGKIVGDIAAQTKQALANLAQVLAAAE
CEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
LSRNDVVQCRVYIPDVAYWDTVNQVYADFFGSHKPARTVVPCGNLHYNALIEIDAVAEFA
CCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]