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The map label for this gene is yqgF [C]

Identifier: 126207719

GI number: 126207719

Start: 250690

End: 251103

Strand: Reverse

Name: yqgF [C]

Synonym: APL_0231

Alternate gene names: 126207719

Gene position: 251103-250690 (Counterclockwise)

Preceding gene: 126207720

Following gene: 126207717

Centisome position: 11.04

GC content: 44.44

Gene sequence:

>414_bases
ATGGCAAGAACAATTCTCGCATTTGATTTCGGTACTTACAGCATCGGTTGTGCGGTCGGACAAGATATTACCGGCACTGC
ACAGGGACTTCCTTCTTTTAAAGCGCAAGACGGGATTCCGAACTGGGATCAAATTGAAAAAGTGATCAAAGAATGGCAGC
CGGAACGCTTAGTGGTCGGCTTACCGCTCAATATGGACGGCAGCGAACAGCCACTTACTCAACGAGCGAAAAAATTTGCG
AATCGCTTAAACGGACGCTTTAATTTGCCGGTTGAGTTACAAGACGAACGCCTTACAACAGTGTCAGCAAAAGCGGAAAT
TTTTGAACGAGGCGGTTACAAAGCCTTAAAAAAAGATAAAGTGGATTCGATTTCCGCCTGTTTAATTTTAGAAAGCTGGT
TTGAAGCCCAATAA

Upstream 100 bases:

>100_bases
GAAATGCTCGGTATTTCAGGTGTATTAGCCCGCGCCGGCAGAGCCTAATGACGGCTTAAGCAGCCGGTCAAAAACAAACC
ATTTTTTGCAAAAGGATAAT

Downstream 100 bases:

>100_bases
AAAAGAATAAGACCGCTAATTTGAACAACGCAAATAAGCGGTCTAATTTTTGGATTTTTTGCAAATCTAAGCCAAATGTT
CCGTGCGGTTAAACTCAACT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MARTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPLNMDGSEQPLTQRAKKFA
NRLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKVDSISACLILESWFEAQ

Sequences:

>Translated_137_residues
MARTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPLNMDGSEQPLTQRAKKFA
NRLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKVDSISACLILESWFEAQ
>Mature_136_residues
ARTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPLNMDGSEQPLTQRAKKFAN
RLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKVDSISACLILESWFEAQ

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=66.6666666666667, Blast_Score=197, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_ACTP2 (A3MYV3)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001052944.1
- ProteinModelPortal:   A3MYV3
- SMR:   A3MYV3
- STRING:   A3MYV3
- GeneID:   4849687
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_0231
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   ACVILEQ
- PhylomeDB:   A3MYV3
- ProtClustDB:   PRK00109
- BioCyc:   APLE416269:APL_0231-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15277; Mature: 15145

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVG
CCCEEEEEECCCEEEEHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
LPLNMDGSEQPLTQRAKKFANRLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDK
ECCCCCCCCCHHHHHHHHHHHHCCCEECCCEEECCCEEEHHHHHHHHHHCCCCHHHHHCC
VDSISACLILESWFEAQ
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVG
CCEEEEEECCCEEEEHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
LPLNMDGSEQPLTQRAKKFANRLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDK
ECCCCCCCCCHHHHHHHHHHHHCCCEECCCEEECCCEEEHHHHHHHHHHCCCCHHHHHCC
VDSISACLILESWFEAQ
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA