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The map label for this gene is rdgC

Identifier: 126207649

GI number: 126207649

Start: 179020

End: 179928

Strand: Direct

Name: rdgC

Synonym: APL_0161

Alternate gene names: 126207649

Gene position: 179020-179928 (Clockwise)

Preceding gene: 126207646

Following gene: 126207650

Centisome position: 7.87

GC content: 39.71

Gene sequence:

>909_bases
ATGTTCTGGTTCAAAAATGTCATGATTTATCGCCTGACTTCGCCGCTTTCGTTGGAAAGTCATTCACTGGAAGATCAACT
GCAACAAACCAAATTTACCCCTTGTTCGCAAAGCGATATGAGTAAATTCGGTTGGTCGAGTCCGCTTTCCGGCTCGGAAT
TATTACATTTTTCTCAGAGCAAACAGTTTTTGTTGGTTTCGCATAAAGAAGATAAGTTATTACCGGCGAATGTGATTAAA
AAAGAAACGGAAGAGCGTATTGCCGTTTTAGAAGAAAAAGAAGCCCGTAAGCTCAAGAAAACCGAAAAACAGGCGATCAA
AGATGATGTGGTGGCAATGTTGTTGCCTCGAGCATTTAGTAAACATCAATTTACCGCAATTTGGTTGGATTTAGATGCCC
AGCTCGTTTATGTTGATGCAGGCTCAAGCAAACGAGCGGAGGATACGCTCGCATTATTGCGTAAAACATTAGGATCGTTA
CCTGTTGTACCTATTTCATTTGCTTTATTGCCAAGTGAAGTGATGACGAACTGGATTGCCAAAGGACATACGCCGAATTG
GTTAAATTTATTAGAAGAAGCCGAGTTAAAATCCTTTGATACGGACAGCGTGGTTCGCTGTAAACGTCAAGATCTGGAAA
GCGAAGAGATTGCCCAACATTTACAAGCGAGCAAATTTGTCACAAAACTTGCAATTGATTGGGAGAACCATTTCTCGTGC
GTATTAAATGAAGATGCTACGCTTTCCCGTGTGAAATTTGCCGATGAAGTGCGTGAGAAAAATGACGATATTTTAAAAGA
AGATATTGCTCAACGTTTCGATGCGGACTTATTGTTAATGACCGAAGAACTTAAATTATTTACGCAAAAAATGATTGAAG
AATTTGGCGGTATTAAAGAACGTATTTAG

Upstream 100 bases:

>100_bases
TCCCTTTTTTAGAAAAAAGGAAGGGGAGATTTGATTAGAGCCCAAAAGAGAAATCTGTTAGAATTTTGCCCATTCTAACA
CCCTAAAAGGATCCTTAAAA

Downstream 100 bases:

>100_bases
GAGAAAGCGATGTTAGTCAGTACAGAAATTTTGGATCAGTATCAGGCTCTTATCTTTGATATGGACGGCACTATTATTGA
TACGATGCCAAGCCATGCGA

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MFWFKNVMIYRLTSPLSLESHSLEDQLQQTKFTPCSQSDMSKFGWSSPLSGSELLHFSQSKQFLLVSHKEDKLLPANVIK
KETEERIAVLEEKEARKLKKTEKQAIKDDVVAMLLPRAFSKHQFTAIWLDLDAQLVYVDAGSSKRAEDTLALLRKTLGSL
PVVPISFALLPSEVMTNWIAKGHTPNWLNLLEEAELKSFDTDSVVRCKRQDLESEEIAQHLQASKFVTKLAIDWENHFSC
VLNEDATLSRVKFADEVREKNDDILKEDIAQRFDADLLLMTEELKLFTQKMIEEFGGIKERI

Sequences:

>Translated_302_residues
MFWFKNVMIYRLTSPLSLESHSLEDQLQQTKFTPCSQSDMSKFGWSSPLSGSELLHFSQSKQFLLVSHKEDKLLPANVIK
KETEERIAVLEEKEARKLKKTEKQAIKDDVVAMLLPRAFSKHQFTAIWLDLDAQLVYVDAGSSKRAEDTLALLRKTLGSL
PVVPISFALLPSEVMTNWIAKGHTPNWLNLLEEAELKSFDTDSVVRCKRQDLESEEIAQHLQASKFVTKLAIDWENHFSC
VLNEDATLSRVKFADEVREKNDDILKEDIAQRFDADLLLMTEELKLFTQKMIEEFGGIKERI
>Mature_302_residues
MFWFKNVMIYRLTSPLSLESHSLEDQLQQTKFTPCSQSDMSKFGWSSPLSGSELLHFSQSKQFLLVSHKEDKLLPANVIK
KETEERIAVLEEKEARKLKKTEKQAIKDDVVAMLLPRAFSKHQFTAIWLDLDAQLVYVDAGSSKRAEDTLALLRKTLGSL
PVVPISFALLPSEVMTNWIAKGHTPNWLNLLEEAELKSFDTDSVVRCKRQDLESEEIAQHLQASKFVTKLAIDWENHFSC
VLNEDATLSRVKFADEVREKNDDILKEDIAQRFDADLLLMTEELKLFTQKMIEEFGGIKERI

Specific function: May be involved in recombination

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family

Homologues:

Organism=Escherichia coli, GI1786592, Length=303, Percent_Identity=49.8349834983498, Blast_Score=300, Evalue=7e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RDGC_ACTP2 (A3MYN3)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001052874.1
- ProteinModelPortal:   A3MYN3
- SMR:   A3MYN3
- STRING:   A3MYN3
- GeneID:   4850196
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_0161
- eggNOG:   COG2974
- HOGENOM:   HBG537402
- OMA:   PCSSQDI
- PhylomeDB:   A3MYN3
- ProtClustDB:   PRK00321
- BioCyc:   APLE416269:APL_0161-MONOMER
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00194
- InterPro:   IPR007476

Pfam domain/function: PF04381 RdgC

EC number: NA

Molecular weight: Translated: 34676; Mature: 34676

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFWFKNVMIYRLTSPLSLESHSLEDQLQQTKFTPCSQSDMSKFGWSSPLSGSELLHFSQS
CCHHHCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHCCC
KQFLLVSHKEDKLLPANVIKKETEERIAVLEEKEARKLKKTEKQAIKDDVVAMLLPRAFS
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KHQFTAIWLDLDAQLVYVDAGSSKRAEDTLALLRKTLGSLPVVPISFALLPSEVMTNWIA
CCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHH
KGHTPNWLNLLEEAELKSFDTDSVVRCKRQDLESEEIAQHLQASKFVTKLAIDWENHFSC
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCCCEEE
VLNEDATLSRVKFADEVREKNDDILKEDIAQRFDADLLLMTEELKLFTQKMIEEFGGIKE
EECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCHHH
RI
CC
>Mature Secondary Structure
MFWFKNVMIYRLTSPLSLESHSLEDQLQQTKFTPCSQSDMSKFGWSSPLSGSELLHFSQS
CCHHHCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHCCC
KQFLLVSHKEDKLLPANVIKKETEERIAVLEEKEARKLKKTEKQAIKDDVVAMLLPRAFS
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KHQFTAIWLDLDAQLVYVDAGSSKRAEDTLALLRKTLGSLPVVPISFALLPSEVMTNWIA
CCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHH
KGHTPNWLNLLEEAELKSFDTDSVVRCKRQDLESEEIAQHLQASKFVTKLAIDWENHFSC
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCCCEEE
VLNEDATLSRVKFADEVREKNDDILKEDIAQRFDADLLLMTEELKLFTQKMIEEFGGIKE
EECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCHHH
RI
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA