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The map label for this gene is yggS [C]

Identifier: 126207540

GI number: 126207540

Start: 57902

End: 58597

Strand: Direct

Name: yggS [C]

Synonym: APL_0052

Alternate gene names: 126207540

Gene position: 57902-58597 (Clockwise)

Preceding gene: 126207537

Following gene: 126207541

Centisome position: 2.55

GC content: 43.68

Gene sequence:

>696_bases
ATGTCGATTTCTCAAAATTTATCTGAAATTAAGCAACAAATTCAGCAAATTTCCCAACAATGCGGGAGAGATAATGTACG
CTTATTAGCCGTTTCTAAAACTAAACCGGTTGAAGCGATTGAAGAGGCGATTGCCGCCGGACAAACTGCCTTCGGCGAAA
ACTATGTGCAGGAAGGTGTGGAGAAAATTGCTTATTTTGCTCAACAACCGAATTTAGAGTGGCATTTTATCGGAGCGTTG
CAGTCGAATAAAACTCGTTTAGTGGCGGAAAATTTTGACTGGATTCAAACGGTTGATCGTTTAAAAATTGCCGAACGCTT
GAGTGCGCAACGCTCGGCAAATAAAGCACCGCTCAATGTGTTGATTCAGATTAATATTAGTGATGAAGCATCTAAATCAG
GTATTCAACCCGAAGAGTTAGATGAGTTGGCAAAAGCGATTAGCCAGCTACCGAATTTACGTTTACGTGGTTTGATGGCG
ATTCCGAAGCCGGAAAGTGAGCCGGAGCAGCAAAAAATCGCATTGCGTAAAATGCAGCAACTTTTTGACCGCTTGCAAGA
CGAGTTTGAAGGGATAGATACGCTTTCAATGGGAATGTCCGATGATATGGCGGCGGCGATTGAGTGCGGTTCGACGATGG
TTCGTATCGGCACGGCAATTTTTGGTGCGAGGGATTATTCCGCTAAAAGCGTTTAA

Upstream 100 bases:

>100_bases
CACCGTCCACATCGGTAATCACTAATTTAATCTGAGTTAAATCCATTATTCTGTTCCTCAATATGCTATGATTTATCCAT
TATAGTTTTTGGAGTAAAAA

Downstream 100 bases:

>100_bases
TTTGCAAAAAATTTAGTAAATCAAACCGCTTAAATCATAGCCAATAAATAAAAATTTCTGTATAATCTCGCCCCTTGATG
AATTGTGATCTTGATCACAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSISQNLSEIKQQIQQISQQCGRDNVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQEGVEKIAYFAQQPNLEWHFIGAL
QSNKTRLVAENFDWIQTVDRLKIAERLSAQRSANKAPLNVLIQINISDEASKSGIQPEELDELAKAISQLPNLRLRGLMA
IPKPESEPEQQKIALRKMQQLFDRLQDEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGARDYSAKSV

Sequences:

>Translated_231_residues
MSISQNLSEIKQQIQQISQQCGRDNVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQEGVEKIAYFAQQPNLEWHFIGAL
QSNKTRLVAENFDWIQTVDRLKIAERLSAQRSANKAPLNVLIQINISDEASKSGIQPEELDELAKAISQLPNLRLRGLMA
IPKPESEPEQQKIALRKMQQLFDRLQDEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGARDYSAKSV
>Mature_230_residues
SISQNLSEIKQQIQQISQQCGRDNVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQEGVEKIAYFAQQPNLEWHFIGALQ
SNKTRLVAENFDWIQTVDRLKIAERLSAQRSANKAPLNVLIQINISDEASKSGIQPEELDELAKAISQLPNLRLRGLMAI
PKPESEPEQQKIALRKMQQLFDRLQDEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGARDYSAKSV

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=251, Percent_Identity=39.4422310756972, Blast_Score=145, Evalue=3e-35,
Organism=Escherichia coli, GI1789321, Length=231, Percent_Identity=64.0692640692641, Blast_Score=289, Evalue=9e-80,
Organism=Caenorhabditis elegans, GI17533025, Length=227, Percent_Identity=37.0044052863436, Blast_Score=125, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6319435, Length=210, Percent_Identity=37.6190476190476, Blast_Score=106, Evalue=3e-24,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=43.1279620853081, Blast_Score=137, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25666; Mature: 25534

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISQNLSEIKQQIQQISQQCGRDNVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQEGV
CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCHHCCHHHHHHHH
EKIAYFAQQPNLEWHFIGALQSNKTRLVAENFDWIQTVDRLKIAERLSAQRSANKAPLNV
HHHHHHHHCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEE
LIQINISDEASKSGIQPEELDELAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKMQQ
EEEEEECCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHH
LFDRLQDEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGARDYSAKSV
HHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SISQNLSEIKQQIQQISQQCGRDNVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQEGV
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCHHCCHHHHHHHH
EKIAYFAQQPNLEWHFIGALQSNKTRLVAENFDWIQTVDRLKIAERLSAQRSANKAPLNV
HHHHHHHHCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEE
LIQINISDEASKSGIQPEELDELAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKMQQ
EEEEEECCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHH
LFDRLQDEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGARDYSAKSV
HHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]