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The map label for this gene is radC [C]

Identifier: 126175757

GI number: 126175757

Start: 4186168

End: 4186611

Strand: Direct

Name: radC [C]

Synonym: Sbal_3561

Alternate gene names: 126175757

Gene position: 4186168-4186611 (Clockwise)

Preceding gene: 126175756

Following gene: 126175758

Centisome position: 81.64

GC content: 47.3

Gene sequence:

>444_bases
ATGGCGATTATCCGTGAAATCAATGTCAAATATCAGTTCAAAGAAACCCAGTGCGCCTTGGCCGAGCAAGCCATAACACG
GCCTGAAGATACCGCGCAGGTATTTAACTACCTTAAGCATGAAACCAAAGAAATGTTTATCGTGGCAAACCTGACAACCC
AGCACACCATTAACTGTGTTGAAGTCGTGGCGACAGGTTCAGTGAACGGCATCAGTATGCGACCCGTCGAAGTGTTACGC
ACGGCAGTCATTCTGAATATGCCCAGCGTTATCCTTGTTCATAACCACCCTTCAGGCGATCCAACACCAAGCACTAGCGA
TATCCAATTCACCCGTAAAGTCATTGAGTGCGCCAAAGTGCTGGATATCAATGTCCTTGACCATGTGATTATTGGCCTTA
ACCGCTTTACCAGCCTTCGCGAAACCCACTGCGATTTGTTCTAA

Upstream 100 bases:

>100_bases
AGAGCGATACCTCAGCCAAAACCACCAAGTAATGCACACACTATCAGGAGAGAAGGAAGCCCTTTCGCTCCTGAGTCTTT
AGCACCAATAGGGATAGACC

Downstream 100 bases:

>100_bases
CACCGACTAAGGACACACAATGAATACCATCAACAAAGAGTTGGCCCTGCCTGTCTCTGACAGACTGCTATTGGCATTAA
CCCCGTTTATCAGTAACCAA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MAIIREINVKYQFKETQCALAEQAITRPEDTAQVFNYLKHETKEMFIVANLTTQHTINCVEVVATGSVNGISMRPVEVLR
TAVILNMPSVILVHNHPSGDPTPSTSDIQFTRKVIECAKVLDINVLDHVIIGLNRFTSLRETHCDLF

Sequences:

>Translated_147_residues
MAIIREINVKYQFKETQCALAEQAITRPEDTAQVFNYLKHETKEMFIVANLTTQHTINCVEVVATGSVNGISMRPVEVLR
TAVILNMPSVILVHNHPSGDPTPSTSDIQFTRKVIECAKVLDINVLDHVIIGLNRFTSLRETHCDLF
>Mature_146_residues
AIIREINVKYQFKETQCALAEQAITRPEDTAQVFNYLKHETKEMFIVANLTTQHTINCVEVVATGSVNGISMRPVEVLRT
AVILNMPSVILVHNHPSGDPTPSTSDIQFTRKVIECAKVLDINVLDHVIIGLNRFTSLRETHCDLF

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=121, Percent_Identity=33.8842975206612, Blast_Score=84, Evalue=3e-18,
Organism=Escherichia coli, GI1788997, Length=99, Percent_Identity=36.3636363636364, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI2367100, Length=99, Percent_Identity=37.3737373737374, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1788312, Length=99, Percent_Identity=37.3737373737374, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 16518; Mature: 16387

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIIREINVKYQFKETQCALAEQAITRPEDTAQVFNYLKHETKEMFIVANLTTQHTINCV
CCEEEEECEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHEE
EVVATGSVNGISMRPVEVLRTAVILNMPSVILVHNHPSGDPTPSTSDIQFTRKVIECAKV
EEEECCCCCCCEECHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
LDINVLDHVIIGLNRFTSLRETHCDLF
HHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AIIREINVKYQFKETQCALAEQAITRPEDTAQVFNYLKHETKEMFIVANLTTQHTINCV
CEEEEECEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHEE
EVVATGSVNGISMRPVEVLRTAVILNMPSVILVHNHPSGDPTPSTSDIQFTRKVIECAKV
EEEECCCCCCCEECHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
LDINVLDHVIIGLNRFTSLRETHCDLF
HHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA