Definition Shewanella baltica OS155 chromosome, complete genome.
Accession NC_009052
Length 5,127,376

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The map label for this gene is ykvO [H]

Identifier: 126175677

GI number: 126175677

Start: 4081026

End: 4081808

Strand: Direct

Name: ykvO [H]

Synonym: Sbal_3480

Alternate gene names: 126175677

Gene position: 4081026-4081808 (Clockwise)

Preceding gene: 126175674

Following gene: 126175678

Centisome position: 79.59

GC content: 50.06

Gene sequence:

>783_bases
ATGCAATTTAATACCTCAAATCTCGCCATTATTGTCGGTGGTAGCAGTGGCATAGGTTTCGAAACGGCGAAACAACTGGC
CGAACAAGGCGTATCAGTGCTCATCGTCGGCAATCAGCAAGATAAACTCACCGCAGCCGTTGCTGCGATCAAACATGCCC
ATCCAGCAGCCGAGTTACGCGTCGACGGTTTTCAAGCCAACCTTTACCAAGCTGCCGATCTTAATCGGTTGATTGCACAC
ATCACCCAGCTTGAGCAAAAGGTTGGCTACCTCGTCAATGCGGCGGGGTATTTCAATCCCAAATCCTTTATCGACCACTC
AGAGGCTGATTACGATCTCTACATGGCGTTAAATAAAGCCCTATTCAAAATCACCCAAGCCGTAACCCACAAGATGATAG
ATGCGGGCGGTGGTAGTATAGTGAACATAGGTTCTATGTGGGCAAAACAAGCGGTTAAAGCCACGCCTTCGTCGGCGTAT
TCCATGGCCAAAGCCGGATTACACGCATTAACCCAGCACTTAGCGATGGAACTGGCAGACAAGCATATTCGCGTCAACGC
GGTTTCACCTGCCGTGGTGAATACGCCCATCTATAACGCTTTTATCCCAGAGGCAGAGCTAGACCAAGTGATTGAAAGCT
TCAACGCTTTTCACCCGATTGGTCGAGTCGGCACGCCAGCCGATGTAGCAAACAGCATTTGTTTTCTTCTATCCGATGAC
ACTAGCTGGGTTACCGGCGCGATTTGGGATGTTGATGGCGGCGTGATGGCTGGACGCAACTAA

Upstream 100 bases:

>100_bases
AGATGTACCAAAAAGTACCTGCCTTACCTATTTGTACTTACTGTTCAGACAGTTATTGAGTTCTTAAGATTACCACCTTG
ATAATACTTAGGAGTAGAAA

Downstream 100 bases:

>100_bases
TATTGCAGACACAGCGAGTATGCTAGTGCGTAGCTAACGGTATGCTTACTCAATTAGCACACTGTTAGCGCAGTAAGACG
CAACGAACACAGTAAACAAT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MQFNTSNLAIIVGGSSGIGFETAKQLAEQGVSVLIVGNQQDKLTAAVAAIKHAHPAAELRVDGFQANLYQAADLNRLIAH
ITQLEQKVGYLVNAAGYFNPKSFIDHSEADYDLYMALNKALFKITQAVTHKMIDAGGGSIVNIGSMWAKQAVKATPSSAY
SMAKAGLHALTQHLAMELADKHIRVNAVSPAVVNTPIYNAFIPEAELDQVIESFNAFHPIGRVGTPADVANSICFLLSDD
TSWVTGAIWDVDGGVMAGRN

Sequences:

>Translated_260_residues
MQFNTSNLAIIVGGSSGIGFETAKQLAEQGVSVLIVGNQQDKLTAAVAAIKHAHPAAELRVDGFQANLYQAADLNRLIAH
ITQLEQKVGYLVNAAGYFNPKSFIDHSEADYDLYMALNKALFKITQAVTHKMIDAGGGSIVNIGSMWAKQAVKATPSSAY
SMAKAGLHALTQHLAMELADKHIRVNAVSPAVVNTPIYNAFIPEAELDQVIESFNAFHPIGRVGTPADVANSICFLLSDD
TSWVTGAIWDVDGGVMAGRN
>Mature_260_residues
MQFNTSNLAIIVGGSSGIGFETAKQLAEQGVSVLIVGNQQDKLTAAVAAIKHAHPAAELRVDGFQANLYQAADLNRLIAH
ITQLEQKVGYLVNAAGYFNPKSFIDHSEADYDLYMALNKALFKITQAVTHKMIDAGGGSIVNIGSMWAKQAVKATPSSAY
SMAKAGLHALTQHLAMELADKHIRVNAVSPAVVNTPIYNAFIPEAELDQVIESFNAFHPIGRVGTPADVANSICFLLSDD
TSWVTGAIWDVDGGVMAGRN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=32.9365079365079, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI19923817, Length=260, Percent_Identity=30.7692307692308, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=30.6513409961686, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=30.0411522633745, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=29.8387096774194, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI126723750, Length=256, Percent_Identity=28.515625, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI7705925, Length=257, Percent_Identity=28.4046692607004, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI66933014, Length=171, Percent_Identity=28.6549707602339, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI126723191, Length=188, Percent_Identity=32.4468085106383, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=30.3664921465969, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=26.8292682926829, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI10190704, Length=261, Percent_Identity=25.2873563218391, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=30.2681992337165, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1787905, Length=261, Percent_Identity=33.7164750957854, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790717, Length=258, Percent_Identity=27.906976744186, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789208, Length=256, Percent_Identity=31.25, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI2367175, Length=259, Percent_Identity=30.1158301158301, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787335, Length=259, Percent_Identity=27.027027027027, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788459, Length=260, Percent_Identity=29.2307692307692, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=28.4, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786812, Length=268, Percent_Identity=30.5970149253731, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=27.906976744186, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=29.5275590551181, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17561402, Length=260, Percent_Identity=31.1538461538462, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=30.6772908366534, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=29.9212598425197, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=264, Percent_Identity=28.030303030303, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=29.811320754717, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562990, Length=254, Percent_Identity=32.6771653543307, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=30.9160305343511, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=256, Percent_Identity=32.421875, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=29.2, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=255, Percent_Identity=32.156862745098, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=31.9230769230769, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=31.1284046692607, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=28.7937743190661, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=29.6992481203008, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=27.734375, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI72000259, Length=258, Percent_Identity=31.0077519379845, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=28.735632183908, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=29.3893129770992, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=29.3893129770992, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=271, Percent_Identity=30.6273062730627, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=29.5880149812734, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=257, Percent_Identity=29.5719844357977, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=238, Percent_Identity=27.7310924369748, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=28.1954887218045, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=273, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=29.811320754717, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17557668, Length=210, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=33.0645161290323, Blast_Score=111, Evalue=6e-25,
Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=33.3333333333333, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=30.8300395256917, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=31.3725490196078, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=30.0395256916996, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=31.8548387096774, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI21355319, Length=265, Percent_Identity=27.5471698113208, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24644337, Length=202, Percent_Identity=31.6831683168317, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI161076933, Length=194, Percent_Identity=28.3505154639175, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24584748, Length=194, Percent_Identity=28.3505154639175, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27708; Mature: 27708

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MQFNTSNLAIIVGGSSGIGFETAKQLAEQGVSVLIVGNQQDKLTAAVAAIKHAHPAAELR
CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCHHHEE
VDGFQANLYQAADLNRLIAHITQLEQKVGYLVNAAGYFNPKSFIDHSEADYDLYMALNKA
ECCHHCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHCCCCCCCHHHHHHHHHH
LFKITQAVTHKMIDAGGGSIVNIGSMWAKQAVKATPSSAYSMAKAGLHALTQHLAMELAD
HHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
KHIRVNAVSPAVVNTPIYNAFIPEAELDQVIESFNAFHPIGRVGTPADVANSICFLLSDD
CCEEEEECCCCEECCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCEEEEEECC
TSWVTGAIWDVDGGVMAGRN
CCEEEEEEEECCCCEECCCC
>Mature Secondary Structure
MQFNTSNLAIIVGGSSGIGFETAKQLAEQGVSVLIVGNQQDKLTAAVAAIKHAHPAAELR
CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCHHHEE
VDGFQANLYQAADLNRLIAHITQLEQKVGYLVNAAGYFNPKSFIDHSEADYDLYMALNKA
ECCHHCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHCCCCCCCHHHHHHHHHH
LFKITQAVTHKMIDAGGGSIVNIGSMWAKQAVKATPSSAYSMAKAGLHALTQHLAMELAD
HHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
KHIRVNAVSPAVVNTPIYNAFIPEAELDQVIESFNAFHPIGRVGTPADVANSICFLLSDD
CCEEEEECCCCEECCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCEEEEEECC
TSWVTGAIWDVDGGVMAGRN
CCEEEEEEEECCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]