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The map label for this gene is ydhY [H]

Identifier: 126175298

GI number: 126175298

Start: 3623888

End: 3624532

Strand: Reverse

Name: ydhY [H]

Synonym: Sbal_3097

Alternate gene names: 126175298

Gene position: 3624532-3623888 (Counterclockwise)

Preceding gene: 126175300

Following gene: 126175297

Centisome position: 70.69

GC content: 47.91

Gene sequence:

>645_bases
ATGATTACCAGAAGAGGAATACTTAAAAGCAGTATGGGCGTTGCTGTCGGTACTGTATATCACGGGACACTGATTAGCTT
TCTTACCGGTTGTGGCAGCGACAATGACAGTCAGGAAGTCGTAGAAGTCATGGCCGGTGGTTTAATGGTGGTTAACCCTC
TGGTGTGTGTGAGTTGTCGACGCTGCGAGATTGCCTGCAGCTGGAACCACGAGGGCGACAGTAGTCCAACGCTGGCGCGC
GTAAAAGTCGAACATAACATGAACTTCGGCCCGCATGGCATGCAATTCAACTATCACATACAGCATGGCGAATGCGGTGA
TGGCACCATAATTCCTGCCACTTGCCGCCAATGTGAAGTTTGTACACAAGTGTGCCCGCAACAGGCTATTTCAACCAACC
CGCTAACCGGCGCCAAAGTGGTTGATGAAGAACTCTGTGTTGGATGTGGTTATTGTGCGGATAAATGTCCGCAGCAAGTG
ATTAAAGTCGTCCGCAGTAAAATGAAAGCCGTGAAATGCGATTTATGCAATGGCCAGCCTGCTTGTGCTCAAGTTTGTCC
TACTGGGGCAATTAAATTTTATCCTTGGGATGAAGCCGAAGCTGCATTAGAACAATATGAAAAATATACCGGCTTAGTTT
CTTGA

Upstream 100 bases:

>100_bases
AGACGTAAAATAATAATAGATATTACTCTAGCATAAATTGTCGGGAATCAAAGTGTATGCATATTTTAATTATATTGCTT
TGACTAATAAAGGATCGAAT

Downstream 100 bases:

>100_bases
ATCGAGGTGAAATATGATGAGTAATATAATTGGTGGTTGGGCAGGAAAAGTCCTTAGAGTTAATTTAACGACAAATACGA
TTTCGTATGATCCCATAGAA

Product: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MITRRGILKSSMGVAVGTVYHGTLISFLTGCGSDNDSQEVVEVMAGGLMVVNPLVCVSCRRCEIACSWNHEGDSSPTLAR
VKVEHNMNFGPHGMQFNYHIQHGECGDGTIIPATCRQCEVCTQVCPQQAISTNPLTGAKVVDEELCVGCGYCADKCPQQV
IKVVRSKMKAVKCDLCNGQPACAQVCPTGAIKFYPWDEAEAALEQYEKYTGLVS

Sequences:

>Translated_214_residues
MITRRGILKSSMGVAVGTVYHGTLISFLTGCGSDNDSQEVVEVMAGGLMVVNPLVCVSCRRCEIACSWNHEGDSSPTLAR
VKVEHNMNFGPHGMQFNYHIQHGECGDGTIIPATCRQCEVCTQVCPQQAISTNPLTGAKVVDEELCVGCGYCADKCPQQV
IKVVRSKMKAVKCDLCNGQPACAQVCPTGAIKFYPWDEAEAALEQYEKYTGLVS
>Mature_214_residues
MITRRGILKSSMGVAVGTVYHGTLISFLTGCGSDNDSQEVVEVMAGGLMVVNPLVCVSCRRCEIACSWNHEGDSSPTLAR
VKVEHNMNFGPHGMQFNYHIQHGECGDGTIIPATCRQCEVCTQVCPQQAISTNPLTGAKVVDEELCVGCGYCADKCPQQV
IKVVRSKMKAVKCDLCNGQPACAQVCPTGAIKFYPWDEAEAALEQYEKYTGLVS

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787963, Length=201, Percent_Identity=31.3432835820896, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI2367245, Length=152, Percent_Identity=30.2631578947368, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787122, Length=158, Percent_Identity=28.4810126582279, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789067, Length=187, Percent_Identity=29.4117647058824, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787749, Length=167, Percent_Identity=28.1437125748503, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87082180, Length=144, Percent_Identity=31.9444444444444, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 23074; Mature: 23074

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
11.7 %Cys+Met (Translated Protein)
8.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
11.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITRRGILKSSMGVAVGTVYHGTLISFLTGCGSDNDSQEVVEVMAGGLMVVNPLVCVSCR
CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEECHHHHHHCC
RCEIACSWNHEGDSSPTLARVKVEHNMNFGPHGMQFNYHIQHGECGDGTIIPATCRQCEV
CEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEHHHHHHHHH
CTQVCPQQAISTNPLTGAKVVDEELCVGCGYCADKCPQQVIKVVRSKMKAVKCDLCNGQP
HHHHCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ACAQVCPTGAIKFYPWDEAEAALEQYEKYTGLVS
HHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MITRRGILKSSMGVAVGTVYHGTLISFLTGCGSDNDSQEVVEVMAGGLMVVNPLVCVSCR
CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEECHHHHHHCC
RCEIACSWNHEGDSSPTLARVKVEHNMNFGPHGMQFNYHIQHGECGDGTIIPATCRQCEV
CEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEHHHHHHHHH
CTQVCPQQAISTNPLTGAKVVDEELCVGCGYCADKCPQQVIKVVRSKMKAVKCDLCNGQP
HHHHCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ACAQVCPTGAIKFYPWDEAEAALEQYEKYTGLVS
HHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]