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The map label for this gene is ydfG [C]

Identifier: 126175254

GI number: 126175254

Start: 3574160

End: 3574960

Strand: Reverse

Name: ydfG [C]

Synonym: Sbal_3052

Alternate gene names: 126175254

Gene position: 3574960-3574160 (Counterclockwise)

Preceding gene: 126175255

Following gene: 126175253

Centisome position: 69.72

GC content: 46.57

Gene sequence:

>801_bases
ATGGACGTTGTTAAGCCATTGAAAATTAATACCGTGCTTATTACAGGTGCAAGCTCAGGCATTGGGCTGCAACTGGCGCA
GGATTATTTAGCCTTAGGTTGGCACGTCATTGCCTGTGGCCGCTCCCAAGAAAGATTAGATGCGTTAGCCTTGAATGAAC
TCGTAGGTGCCACGCTGTTAATTTTTGATATATCCCAGCGCGACCAAGTTCAACAAGCTGGCCAAGATTTAGCCGAGCTG
TTGGCGAAAACCGATTGTCAGCTCGATTTGGTGGTTTTGAACGCAGGCAGTTGTGAGTATATAGACGATGCTAAGGCCTT
CGATGATGTGTTATTCGAGCGCGTCGTCCATACCAATTTAATTGCGATGGGATATTGTCTCGGGGCATTTTTACCTTTAA
TGCCAAGGGGTTCACGTATTGGCTTAATGAGTTCCAGCGCTATTTATTTACCTTTCCCTCGCGCTGAAGCCTACGGCGCC
TCTAAAGCTGGCGTGCAGTATCTCGCCTCGAGTCTCTCGCTTGATCTTGCTAAGAATGACATAGGTGTGAGCTTGATTTG
CCCTGGTTTCGTGGCGACGCCACTGACCGCAAAAAATGATTTTTCTATGCCAATGCAAGTGAGTGTACAAACCGCTTCTA
AGGCGATACGTAATGGGCTGAAAGGTGGCAAGCGCGAGATCCATTTTCCGCGACGCTTTACTTATCTATTGAAATTGATG
TCGTTTTTACCTGCCTTTGTGTGGCAAAAAATGATTGCAAACGATACTCAAGCCAAGCCGCTTAAGGACAAGAGTTTATG
A

Upstream 100 bases:

>100_bases
ATTTTCACAGGGATTACTTCGACTTAGGGCAAATGTTGTACGAGCATTTGCCTTGCATGGGCGGGCTTATCCGCATGCTT
AAAGACAGGGCGGCTAAGTA

Downstream 100 bases:

>100_bases
AAAATATCGCCATCGTCGGCACCGGCATTTCTGGATTAACCTGCGGCCATCTATTAAGCGAGTCGCACAAGGTCACAGTG
TTTGAGGCCAATGACTATAT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MDVVKPLKINTVLITGASSGIGLQLAQDYLALGWHVIACGRSQERLDALALNELVGATLLIFDISQRDQVQQAGQDLAEL
LAKTDCQLDLVVLNAGSCEYIDDAKAFDDVLFERVVHTNLIAMGYCLGAFLPLMPRGSRIGLMSSSAIYLPFPRAEAYGA
SKAGVQYLASSLSLDLAKNDIGVSLICPGFVATPLTAKNDFSMPMQVSVQTASKAIRNGLKGGKREIHFPRRFTYLLKLM
SFLPAFVWQKMIANDTQAKPLKDKSL

Sequences:

>Translated_266_residues
MDVVKPLKINTVLITGASSGIGLQLAQDYLALGWHVIACGRSQERLDALALNELVGATLLIFDISQRDQVQQAGQDLAEL
LAKTDCQLDLVVLNAGSCEYIDDAKAFDDVLFERVVHTNLIAMGYCLGAFLPLMPRGSRIGLMSSSAIYLPFPRAEAYGA
SKAGVQYLASSLSLDLAKNDIGVSLICPGFVATPLTAKNDFSMPMQVSVQTASKAIRNGLKGGKREIHFPRRFTYLLKLM
SFLPAFVWQKMIANDTQAKPLKDKSL
>Mature_266_residues
MDVVKPLKINTVLITGASSGIGLQLAQDYLALGWHVIACGRSQERLDALALNELVGATLLIFDISQRDQVQQAGQDLAEL
LAKTDCQLDLVVLNAGSCEYIDDAKAFDDVLFERVVHTNLIAMGYCLGAFLPLMPRGSRIGLMSSSAIYLPFPRAEAYGA
SKAGVQYLASSLSLDLAKNDIGVSLICPGFVATPLTAKNDFSMPMQVSVQTASKAIRNGLKGGKREIHFPRRFTYLLKLM
SFLPAFVWQKMIANDTQAKPLKDKSL

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI33667109, Length=228, Percent_Identity=29.3859649122807, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI5031737, Length=195, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1787820, Length=186, Percent_Identity=32.258064516129, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786701, Length=189, Percent_Identity=32.2751322751323, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082100, Length=195, Percent_Identity=31.7948717948718, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1789378, Length=194, Percent_Identity=28.3505154639175, Blast_Score=62, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322227, Length=196, Percent_Identity=27.5510204081633, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21358495, Length=195, Percent_Identity=31.7948717948718, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28898; Mature: 28898

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVVKPLKINTVLITGASSGIGLQLAQDYLALGWHVIACGRSQERLDALALNELVGATLL
CCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHCCEEE
IFDISQRDQVQQAGQDLAELLAKTDCQLDLVVLNAGSCEYIDDAKAFDDVLFERVVHTNL
EEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
IAMGYCLGAFLPLMPRGSRIGLMSSSAIYLPFPRAEAYGASKAGVQYLASSLSLDLAKND
HHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHCCC
IGVSLICPGFVATPLTAKNDFSMPMQVSVQTASKAIRNGLKGGKREIHFPRRFTYLLKLM
CCEEEECCCHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
SFLPAFVWQKMIANDTQAKPLKDKSL
HHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MDVVKPLKINTVLITGASSGIGLQLAQDYLALGWHVIACGRSQERLDALALNELVGATLL
CCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHCCEEE
IFDISQRDQVQQAGQDLAELLAKTDCQLDLVVLNAGSCEYIDDAKAFDDVLFERVVHTNL
EEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
IAMGYCLGAFLPLMPRGSRIGLMSSSAIYLPFPRAEAYGASKAGVQYLASSLSLDLAKND
HHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHCCC
IGVSLICPGFVATPLTAKNDFSMPMQVSVQTASKAIRNGLKGGKREIHFPRRFTYLLKLM
CCEEEECCCHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
SFLPAFVWQKMIANDTQAKPLKDKSL
HHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1730672 [H]