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The map label for this gene is cydB [H]

Identifier: 126175180

GI number: 126175180

Start: 3496977

End: 3498116

Strand: Reverse

Name: cydB [H]

Synonym: Sbal_2978

Alternate gene names: 126175180

Gene position: 3498116-3496977 (Counterclockwise)

Preceding gene: 126175181

Following gene: 126175179

Centisome position: 68.22

GC content: 47.72

Gene sequence:

>1140_bases
ATGTTTGATTATGAAATATTAAGAGTTATCTGGTGGGCTCTGATCGGCGTACTGTTCATCGGATTTGCGGTTACTGACGG
TTTTGACATGGGTGTCGGTGCGTTACTGCCAATCATAGGCAAAGACGATACTGAGCGCCGTATCATGATTAATACTATTG
CTCCCCATTGGGACGGCAACCAAGTGTGGTTAATCACAGCAGGCGGTGCGTTATTTGCTGCTTGGCCTATGGTGTATGCA
GTGTCTTTCTCTGGCTTCTATGTCGCCATGATGTTAGTGCTGTTTGCCCTCTACATGCGCCCAGTTGGATTCGATTACCG
TTCTAAAATCGAAAATCCAAAGTGGCGTAAGTCATGGGATTGGGCCTTGTTTGCCGGTGGTTTTGTACCTCCGCTGATCA
TAGGCGTGGCCTTTGGTAACTTGTTACAAGGCGTACCGTTTGAATTCGACGAGTTCCTACGTGCGACTTACCACGGCGGT
CTATTCGGTCTGTTGAATCCTTTCGGTCTACTGGCAGGTCTTGTTAGCGTGAGCATGTTTATGATGCAAGGCGCTTCTTG
GCTACAAATGAAGACAGATAGCGAGCTGCGAGTGCGTGCTGCGAAAGCGACACAATTCTTCGCCATGTTAGTGGCTGTGT
TGTTTGCTGCTGCGGGCGTGTGGTTAGCCAATGGTATCGATGGTTATGTAGTGACATCTGTCCTTGACCATAATGCGGTG
TCTAACCCAGCAATGAAAACAGTCGCGATTGAAGCGGGTGCTTGGCTTGCCAACTATGACAAATACCCCATCACTATGCT
GTTCCCTATCTTAGGTGTGGTATTGCCGCTGTTAGTGATTCTGGTGAGCCGCTTTAACCGTTCAGGTTTTGCGTTCCTAT
TCAGCTCACTGACTGTGGCTATGGTGATTTTGACTTGCGGTGCAGCAATGTTCCCATTCGTTATGCCATCGTCACTAGAC
CCTAACGTCAGTTTGACTATGTGGGATGCAACAGCCAGTAAAATGACCTTAGGTGTTATGACTGCTGCAGCTGCGATTTT
CGTACCCATAGTGTTGAGCTACACTGTCTGGACTTACTACAAGATGTTTGGTCGTATCGGCCGTAAGCATATTGAAGATA
ACAAAGCCTCACTCTATTAG

Upstream 100 bases:

>100_bases
GATGTTCTTGATGTTTAAGTTTGCCCGCATTGGTCCGAGCAGTTTAAAAACTGGTCGTTATCATTTCGAGAACCTAGAAG
CCTAAGCAGAGGATTTCATT

Downstream 100 bases:

>100_bases
GCATTAAGGAGCATCTGCTATGTGGTATTTTACGTGGATATTAGGGGTTTTGTTGGCCTGTTCTTTCGGGATTATCAATG
CCCTGTGGCTTGAGAATACT

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINTIAPHWDGNQVWLITAGGALFAAWPMVYA
VSFSGFYVAMMLVLFALYMRPVGFDYRSKIENPKWRKSWDWALFAGGFVPPLIIGVAFGNLLQGVPFEFDEFLRATYHGG
LFGLLNPFGLLAGLVSVSMFMMQGASWLQMKTDSELRVRAAKATQFFAMLVAVLFAAAGVWLANGIDGYVVTSVLDHNAV
SNPAMKTVAIEAGAWLANYDKYPITMLFPILGVVLPLLVILVSRFNRSGFAFLFSSLTVAMVILTCGAAMFPFVMPSSLD
PNVSLTMWDATASKMTLGVMTAAAAIFVPIVLSYTVWTYYKMFGRIGRKHIEDNKASLY

Sequences:

>Translated_379_residues
MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINTIAPHWDGNQVWLITAGGALFAAWPMVYA
VSFSGFYVAMMLVLFALYMRPVGFDYRSKIENPKWRKSWDWALFAGGFVPPLIIGVAFGNLLQGVPFEFDEFLRATYHGG
LFGLLNPFGLLAGLVSVSMFMMQGASWLQMKTDSELRVRAAKATQFFAMLVAVLFAAAGVWLANGIDGYVVTSVLDHNAV
SNPAMKTVAIEAGAWLANYDKYPITMLFPILGVVLPLLVILVSRFNRSGFAFLFSSLTVAMVILTCGAAMFPFVMPSSLD
PNVSLTMWDATASKMTLGVMTAAAAIFVPIVLSYTVWTYYKMFGRIGRKHIEDNKASLY
>Mature_379_residues
MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINTIAPHWDGNQVWLITAGGALFAAWPMVYA
VSFSGFYVAMMLVLFALYMRPVGFDYRSKIENPKWRKSWDWALFAGGFVPPLIIGVAFGNLLQGVPFEFDEFLRATYHGG
LFGLLNPFGLLAGLVSVSMFMMQGASWLQMKTDSELRVRAAKATQFFAMLVAVLFAAAGVWLANGIDGYVVTSVLDHNAV
SNPAMKTVAIEAGAWLANYDKYPITMLFPILGVVLPLLVILVSRFNRSGFAFLFSSLTVAMVILTCGAAMFPFVMPSSLD
PNVSLTMWDATASKMTLGVMTAAAAIFVPIVLSYTVWTYYKMFGRIGRKHIEDNKASLY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=66.2269129287599, Blast_Score=514, Evalue=1e-147,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=53.0343007915567, Blast_Score=411, Evalue=1e-116,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41854; Mature: 41854

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINTIAPHWDGN
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCC
QVWLITAGGALFAAWPMVYAVSFSGFYVAMMLVLFALYMRPVGFDYRSKIENPKWRKSWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCC
WALFAGGFVPPLIIGVAFGNLLQGVPFEFDEFLRATYHGGLFGLLNPFGLLAGLVSVSMF
CCEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MMQGASWLQMKTDSELRVRAAKATQFFAMLVAVLFAAAGVWLANGIDGYVVTSVLDHNAV
HHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
SNPAMKTVAIEAGAWLANYDKYPITMLFPILGVVLPLLVILVSRFNRSGFAFLFSSLTVA
CCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
MVILTCGAAMFPFVMPSSLDPNVSLTMWDATASKMTLGVMTAAAAIFVPIVLSYTVWTYY
HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMFGRIGRKHIEDNKASLY
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINTIAPHWDGN
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCC
QVWLITAGGALFAAWPMVYAVSFSGFYVAMMLVLFALYMRPVGFDYRSKIENPKWRKSWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCC
WALFAGGFVPPLIIGVAFGNLLQGVPFEFDEFLRATYHGGLFGLLNPFGLLAGLVSVSMF
CCEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MMQGASWLQMKTDSELRVRAAKATQFFAMLVAVLFAAAGVWLANGIDGYVVTSVLDHNAV
HHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
SNPAMKTVAIEAGAWLANYDKYPITMLFPILGVVLPLLVILVSRFNRSGFAFLFSSLTVA
CCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
MVILTCGAAMFPFVMPSSLDPNVSLTMWDATASKMTLGVMTAAAAIFVPIVLSYTVWTYY
HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMFGRIGRKHIEDNKASLY
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]