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The map label for this gene is ntrC [H]

Identifier: 126175132

GI number: 126175132

Start: 3444609

End: 3446042

Strand: Reverse

Name: ntrC [H]

Synonym: Sbal_2930

Alternate gene names: 126175132

Gene position: 3446042-3444609 (Counterclockwise)

Preceding gene: 126175133

Following gene: 126175131

Centisome position: 67.21

GC content: 45.68

Gene sequence:

>1434_bases
ATGATGCAAACAGATCAACGAATTTTACTTATCGGCCCCCCATCAGAGCGATTAAATCGCCTGTGTTGCATTTTTGATTT
TTTAGGTGAGCAAATTGCACAAATTGACGCCGAAAAATTAAGTGCTAGCCTCCAAGATACTCGTTTTCGAGCTTTAGTTA
TCCTAACTGATGTTATGGATGCTGATGCGCTTAAAAACATCGCGGGTCAACATCCATGGCAACCTATGCTGTTGCTTGGC
AACGTTGACGATCTGCAAGTGTCTAACATTCTTGGAAATATTGAGGAACCTTTAACTTATCCTCAACTCACCGAATTATT
ACACTTCTGCCAAGTATTTGGCCAAGTTAAGCGCCCTCAAGTCCCCACAAGTGCAAATCAAACTAAGTTATTCCGAAGCT
TGGTTGGGCGCAGTGATGGTATTGCCAATGTAAGGCACTTGATTAATCAAGTGGCGACATCTGAGGCGACTGTACTAGTA
CTGGGCCAATCGGGTACAGGTAAAGAAGTGGTCGCCCGTAATATCCATTATTTGTCTGAGCGCCGTGATGGCCCTTTTAT
TCCTGTTAACTGTGGTGCTATACCGCCAGAGTTGTTAGAGAGTGAACTTTTTGGTCATGAGAAGGGATCATTTACTGGGG
CAATTTGTTCTCGTAAGGGCCGTTTCGAATTGGCGGAAGGTGGCACACTATTTCTCGATGAAATTGGTGACATGCCATTG
CAGATGCAAGTTAAATTGCTTCGTGTACTGCAAGAACGGGTATTTGAGCGTGTTGGCGGCACTAAGACCATCAATGCCGA
TGTGCGCGTTGTAGCAGCGACACATAGAGATTTAGAAACCATGATCAGCGTGAATGAGTTCCGCGAGGATCTCTATTACC
GCCTAAACGTATTCCCGATCGAAATGCCCGCGTTGTGTGATCGCAAGGACGATGTGCCTTTGTTATTACAAGAGTTGGTG
AGCCGAGTCTACAACGAAGGCCGTGGCAAGGTGCGTTTTACGCAGCGTGCGATAGAGTCGTTAAAAGAACATGCTTGGTC
GGGTAACGTTCGTGAGCTGTCTAATTTAGTCGAACGCCTCACTATTTTATATCCGGGTGGACTGGTTGATGTTAACGACT
TACCCGTTAAGTATCGCCATATCGATGTGCCCGAATATTGTGTAGAGATGAGCGAAGAGCAGCAAGAACGTGATGCTTTG
GCTTCTATCTTTAGTGATGAAGAGCCGGTTGAAATCCCTGAGACGCGTTTCCCAAGTGAGCTACCGCCTGAAGGTGTGAA
CCTTAAGGATTTATTAGCAGAACTGGAAATCGACATGATACGTCAGGCGCTAGAGCTGCAAGATAACGTTGTTGCTCGCG
CGGCTGAGATGTTAGGAATACGTCGTACAACGCTAGTAGAAAAAATGCGTAAGTACGGAATGACCAAAGATTAG

Upstream 100 bases:

>100_bases
GTGGCACAGATTGTTACATTGAATTTGTTAAGCTTTTACAGCAACTAATCATAAATAATTAATGCGAATTAATACATATT
AGAGCTTTACGGCCTACTGA

Downstream 100 bases:

>100_bases
TTTTCTATTTCATTGTTATATAAGTAGTTTTAACCTCTAAAGTTCAATTTCTAATTTGGCATAGATACTGCAGTCACTCC
GTCATAAGCAATTTTTTGAC

Product: sigma-54 dependent trancsriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MMQTDQRILLIGPPSERLNRLCCIFDFLGEQIAQIDAEKLSASLQDTRFRALVILTDVMDADALKNIAGQHPWQPMLLLG
NVDDLQVSNILGNIEEPLTYPQLTELLHFCQVFGQVKRPQVPTSANQTKLFRSLVGRSDGIANVRHLINQVATSEATVLV
LGQSGTGKEVVARNIHYLSERRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAICSRKGRFELAEGGTLFLDEIGDMPL
QMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLETMISVNEFREDLYYRLNVFPIEMPALCDRKDDVPLLLQELV
SRVYNEGRGKVRFTQRAIESLKEHAWSGNVRELSNLVERLTILYPGGLVDVNDLPVKYRHIDVPEYCVEMSEEQQERDAL
ASIFSDEEPVEIPETRFPSELPPEGVNLKDLLAELEIDMIRQALELQDNVVARAAEMLGIRRTTLVEKMRKYGMTKD

Sequences:

>Translated_477_residues
MMQTDQRILLIGPPSERLNRLCCIFDFLGEQIAQIDAEKLSASLQDTRFRALVILTDVMDADALKNIAGQHPWQPMLLLG
NVDDLQVSNILGNIEEPLTYPQLTELLHFCQVFGQVKRPQVPTSANQTKLFRSLVGRSDGIANVRHLINQVATSEATVLV
LGQSGTGKEVVARNIHYLSERRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAICSRKGRFELAEGGTLFLDEIGDMPL
QMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLETMISVNEFREDLYYRLNVFPIEMPALCDRKDDVPLLLQELV
SRVYNEGRGKVRFTQRAIESLKEHAWSGNVRELSNLVERLTILYPGGLVDVNDLPVKYRHIDVPEYCVEMSEEQQERDAL
ASIFSDEEPVEIPETRFPSELPPEGVNLKDLLAELEIDMIRQALELQDNVVARAAEMLGIRRTTLVEKMRKYGMTKD
>Mature_477_residues
MMQTDQRILLIGPPSERLNRLCCIFDFLGEQIAQIDAEKLSASLQDTRFRALVILTDVMDADALKNIAGQHPWQPMLLLG
NVDDLQVSNILGNIEEPLTYPQLTELLHFCQVFGQVKRPQVPTSANQTKLFRSLVGRSDGIANVRHLINQVATSEATVLV
LGQSGTGKEVVARNIHYLSERRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAICSRKGRFELAEGGTLFLDEIGDMPL
QMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLETMISVNEFREDLYYRLNVFPIEMPALCDRKDDVPLLLQELV
SRVYNEGRGKVRFTQRAIESLKEHAWSGNVRELSNLVERLTILYPGGLVDVNDLPVKYRHIDVPEYCVEMSEEQQERDAL
ASIFSDEEPVEIPETRFPSELPPEGVNLKDLLAELEIDMIRQALELQDNVVARAAEMLGIRRTTLVEKMRKYGMTKD

Specific function: Member of the two-component regulatory system ntrB/ntrC involved in the activation of nitrogen assimilatory genes such as glnA. NtrC is phosphorylated by ntrB and interacts with sigma-54 [H]

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI87082117, Length=355, Percent_Identity=41.9718309859155, Blast_Score=269, Evalue=3e-73,
Organism=Escherichia coli, GI1789087, Length=350, Percent_Identity=42.5714285714286, Blast_Score=262, Evalue=3e-71,
Organism=Escherichia coli, GI1788550, Length=327, Percent_Identity=44.0366972477064, Blast_Score=261, Evalue=9e-71,
Organism=Escherichia coli, GI1790437, Length=431, Percent_Identity=38.2830626450116, Blast_Score=254, Evalue=8e-69,
Organism=Escherichia coli, GI1790299, Length=436, Percent_Identity=35.5504587155963, Blast_Score=244, Evalue=8e-66,
Organism=Escherichia coli, GI1788905, Length=323, Percent_Identity=41.4860681114551, Blast_Score=241, Evalue=7e-65,
Organism=Escherichia coli, GI1789233, Length=368, Percent_Identity=39.6739130434783, Blast_Score=231, Evalue=7e-62,
Organism=Escherichia coli, GI87082152, Length=231, Percent_Identity=45.4545454545455, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI87081872, Length=342, Percent_Identity=34.7953216374269, Blast_Score=198, Evalue=6e-52,
Organism=Escherichia coli, GI1786524, Length=352, Percent_Identity=36.0795454545455, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1787583, Length=354, Percent_Identity=31.638418079096, Blast_Score=167, Evalue=2e-42,
Organism=Escherichia coli, GI87081858, Length=329, Percent_Identity=30.0911854103343, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1789828, Length=235, Percent_Identity=36.5957446808511, Blast_Score=145, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR010114
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 53818; Mature: 53818

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQTDQRILLIGPPSERLNRLCCIFDFLGEQIAQIDAEKLSASLQDTRFRALVILTDVMD
CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHH
ADALKNIAGQHPWQPMLLLGNVDDLQVSNILGNIEEPLTYPQLTELLHFCQVFGQVKRPQ
HHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHCCCCC
VPTSANQTKLFRSLVGRSDGIANVRHLINQVATSEATVLVLGQSGTGKEVVARNIHYLSE
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
RRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAICSRKGRFELAEGGTLFLDEIGDMPL
CCCCCEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHCCCCCEEECCCCEEEEHHHCCCCH
QMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLETMISVNEFREDLYYRLNVFPI
HHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEECHHHHHHHHHHHHHHHHHHEEEEEEEE
EMPALCDRKDDVPLLLQELVSRVYNEGRGKVRFTQRAIESLKEHAWSGNVRELSNLVERL
CCCHHCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHH
TILYPGGLVDVNDLPVKYRHIDVPEYCVEMSEEQQERDALASIFSDEEPVEIPETRFPSE
HHCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
LPPEGVNLKDLLAELEIDMIRQALELQDNVVARAAEMLGIRRTTLVEKMRKYGMTKD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MMQTDQRILLIGPPSERLNRLCCIFDFLGEQIAQIDAEKLSASLQDTRFRALVILTDVMD
CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHH
ADALKNIAGQHPWQPMLLLGNVDDLQVSNILGNIEEPLTYPQLTELLHFCQVFGQVKRPQ
HHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHCCCCC
VPTSANQTKLFRSLVGRSDGIANVRHLINQVATSEATVLVLGQSGTGKEVVARNIHYLSE
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
RRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAICSRKGRFELAEGGTLFLDEIGDMPL
CCCCCEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHCCCCCEEECCCCEEEEHHHCCCCH
QMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLETMISVNEFREDLYYRLNVFPI
HHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEECHHHHHHHHHHHHHHHHHHEEEEEEEE
EMPALCDRKDDVPLLLQELVSRVYNEGRGKVRFTQRAIESLKEHAWSGNVRELSNLVERL
CCCHHCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHH
TILYPGGLVDVNDLPVKYRHIDVPEYCVEMSEEQQERDALASIFSDEEPVEIPETRFPSE
HHCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
LPPEGVNLKDLLAELEIDMIRQALELQDNVVARAAEMLGIRRTTLVEKMRKYGMTKD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2881918; 11481430; 8478331 [H]