| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is yfbR [C]
Identifier: 126174452
GI number: 126174452
Start: 2585709
End: 2586296
Strand: Direct
Name: yfbR [C]
Synonym: Sbal_2236
Alternate gene names: 126174452
Gene position: 2585709-2586296 (Clockwise)
Preceding gene: 126174451
Following gene: 126174453
Centisome position: 50.43
GC content: 45.75
Gene sequence:
>588_bases ATGAGTCACTTATTTGCCCATTTAGCTCGAATGAAACTTATCCAACGCTGGCCTTTGATGTACAACGTTCGCACTGAAAA TGTTCAGGAACACTCGCTACAAGTCGCCATGGTGGCCCATGCACTGGTGATCATCAGCAATAAAAAGTTCGGCACGACGC TTGATCCCCATCAAGCCACGAGCCTGGCGATTTTTCACGATGCCAGTGAAATTCTCACGGGTGACTTACCAACGCCGGTG AAATACTTCAATAAAGAAATCGAAGCCGAGTATAAAAAAATTGAGGCGATTGCCGAGCAGCGCATGCTGGATATGGTGCC AGAAGAATTTAAAGAAGATTATCGCAGTCTGTTCATCAGTGATTACGCCGATCCCGTTTACAAGACCATAGTGAAATCCG CTGATACTCTGTGTGCCTATCTTAAATGTCTTGAAGAAAACCGCGCGGGAAACAGTGAGTTCAACACCGCCCGTAAGCGT CTCGAAGACATGCTGGCGACAAATCCTGACCCCGCAGTACAGTATTTTATGAACTGCTTTGTGCCCAGTTTCACCTTGAA TTTAGACGAAATTAACAAGATGCTTTGA
Upstream 100 bases:
>100_bases TAATCTAAGACTTCATTAGCGTCAATACTGCTTATTCAACTCGTGTCACGTCTTCCAATGCAGCTTGTCGCCTTTCTATT CACTTATTAGCAGGAAAATC
Downstream 100 bases:
>100_bases TTTTCCACTCTCGCTAGGAATGCATATGACTTCAAGTGTTTGGCAAGAACGCCGTCATGGTGAAGATAAACAACGGCGTA ACGATCACCGCAGCCCTTAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 195; Mature: 194
Protein sequence:
>195_residues MSHLFAHLARMKLIQRWPLMYNVRTENVQEHSLQVAMVAHALVIISNKKFGTTLDPHQATSLAIFHDASEILTGDLPTPV KYFNKEIEAEYKKIEAIAEQRMLDMVPEEFKEDYRSLFISDYADPVYKTIVKSADTLCAYLKCLEENRAGNSEFNTARKR LEDMLATNPDPAVQYFMNCFVPSFTLNLDEINKML
Sequences:
>Translated_195_residues MSHLFAHLARMKLIQRWPLMYNVRTENVQEHSLQVAMVAHALVIISNKKFGTTLDPHQATSLAIFHDASEILTGDLPTPV KYFNKEIEAEYKKIEAIAEQRMLDMVPEEFKEDYRSLFISDYADPVYKTIVKSADTLCAYLKCLEENRAGNSEFNTARKR LEDMLATNPDPAVQYFMNCFVPSFTLNLDEINKML >Mature_194_residues SHLFAHLARMKLIQRWPLMYNVRTENVQEHSLQVAMVAHALVIISNKKFGTTLDPHQATSLAIFHDASEILTGDLPTPVK YFNKEIEAEYKKIEAIAEQRMLDMVPEEFKEDYRSLFISDYADPVYKTIVKSADTLCAYLKCLEENRAGNSEFNTARKRL EDMLATNPDPAVQYFMNCFVPSFTLNLDEINKML
Specific function: Unknown
COG id: COG1896
COG function: function code R; Predicted hydrolases of HD superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0207 family [H]
Homologues:
Organism=Escherichia coli, GI1788628, Length=192, Percent_Identity=59.375, Blast_Score=235, Evalue=1e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022971 - InterPro: IPR003607 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22472; Mature: 22341
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHLFAHLARMKLIQRWPLMYNVRTENVQEHSLQVAMVAHALVIISNKKFGTTLDPHQAT CHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH SLAIFHDASEILTGDLPTPVKYFNKEIEAEYKKIEAIAEQRMLDMVPEEFKEDYRSLFIS HHHEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH DYADPVYKTIVKSADTLCAYLKCLEENRAGNSEFNTARKRLEDMLATNPDPAVQYFMNCF HHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH VPSFTLNLDEINKML CCHHCCCHHHHHHCC >Mature Secondary Structure SHLFAHLARMKLIQRWPLMYNVRTENVQEHSLQVAMVAHALVIISNKKFGTTLDPHQAT HHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH SLAIFHDASEILTGDLPTPVKYFNKEIEAEYKKIEAIAEQRMLDMVPEEFKEDYRSLFIS HHHEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH DYADPVYKTIVKSADTLCAYLKCLEENRAGNSEFNTARKRLEDMLATNPDPAVQYFMNCF HHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH VPSFTLNLDEINKML CCHHCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]