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The map label for this gene is yddU [C]

Identifier: 126174345

GI number: 126174345

Start: 2469049

End: 2470257

Strand: Direct

Name: yddU [C]

Synonym: Sbal_2127

Alternate gene names: 126174345

Gene position: 2469049-2470257 (Clockwise)

Preceding gene: 126174344

Following gene: 126174346

Centisome position: 48.15

GC content: 42.6

Gene sequence:

>1209_bases
ATGAATATTCTCATCATAGATGATCAGCGCTTTATTCGAGAAACCATGAAAGCCGATATCCATAAGTTCTTGGTTGACGA
TAATGTGCAGATCTATGAGGCCTGTAATGGTAATCAAGGCATAGAACTGATTATTGACATCGAAGTGGTGCTTGATTTGA
TCATCATAGATCTCAAGATGGACCAAGGAGATGGAATCGCAGTCATCAATATGTTGGCCTCCGAGCCCCGTTTTGCCGCG
ATTCCGATTGCGGTGATCAGCTCTTCGGATAAACGGACTTTAGAGCTGGTGGACAATATCATCACAGTGCTGAGGCTCAA
CTTGCTGGGGGTATTTGCTAAGCCTATCAACGTGAATGATATTTTAACGCCATTGTTAGAAGCATCCACGGATAGACATC
ATGCGCATCAACATCAATCGATCGTGCAAAACAGGGCGGCCAATATCAATGTGCGGCAATTGATTAAAGATGAACAATTA
ATTCTCTGCTATCAACCTAAGATCAACCTAAAGACCAAGGAAATCATGGGTTTTGAAGTGCTGTCGCGGCTTTGCGATCA
ATCCAATGGCTATATTTATCCCGACGTATTTTTGCCACTGGTTAATCAACAGGGACTGAATAGCCTGTTCTCGCGGATGG
TCATTTCCCAGGCGTTGCAATGTTGGTCGCGTCAACCTTTACTGACGGCGTTTGCGCTGTCGATTAACATTACCGCCGAC
GATCTGACCTGCGATGAACTGATTGAATTCATCATCGAATGTGGCCGTGAGCATAAACACATCCATTTGATTTTAGAGCT
CACTGAATCGCAAGAGATCATCAATCAAGATAGAGTGCTTAACTCAATTGCACGGCTGATTATCAACAATATTGATATTT
CCCTCGATGATTTCGGTAAAAGTTATTCCACTTATGATCGCCTCGATGCCATTCCCTTTAAAGAAATTAAAATTGATAAA
AGTTTTGTCTCCGATATGGATATTAATCACCAACATTATCTCATTGTGGAGTCCACCATAGCACTTGCGCAGAAGATGCA
CGTAAAGGTGGTTGCCGAAGGCGTTGAGACAAGTGCAATAGAAGCCATTCTCTCTGAACTAGGCTGTGATGTTGCCCAAG
GCTATTTATATAGCCCGCCAATTGAAGGTCGTTATCTTATTGATTGGATATCGCAATACAATAGGGAATGCCTAACTCAT
GGATACTAA

Upstream 100 bases:

>100_bases
AGGTGATGGCAAATCGTAATCTACTCAAGCTTTCCGTCATTCCTTCATCAAAATCCCAAACGATCGATCCCATTTTCTTC
ATGCAGTTAGAGACCCCTAT

Downstream 100 bases:

>100_bases
GTCAATAATTAATAATGAGTTAACACTGGCCTTATCGACATTTTTTGAGCAATACAGCCAAGAACAGCAATTGCGGCTGC
GATCAACACTTATCGCAGAG

Product: response regulator receiver modulated diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MNILIIDDQRFIRETMKADIHKFLVDDNVQIYEACNGNQGIELIIDIEVVLDLIIIDLKMDQGDGIAVINMLASEPRFAA
IPIAVISSSDKRTLELVDNIITVLRLNLLGVFAKPINVNDILTPLLEASTDRHHAHQHQSIVQNRAANINVRQLIKDEQL
ILCYQPKINLKTKEIMGFEVLSRLCDQSNGYIYPDVFLPLVNQQGLNSLFSRMVISQALQCWSRQPLLTAFALSINITAD
DLTCDELIEFIIECGREHKHIHLILELTESQEIINQDRVLNSIARLIINNIDISLDDFGKSYSTYDRLDAIPFKEIKIDK
SFVSDMDINHQHYLIVESTIALAQKMHVKVVAEGVETSAIEAILSELGCDVAQGYLYSPPIEGRYLIDWISQYNRECLTH
GY

Sequences:

>Translated_402_residues
MNILIIDDQRFIRETMKADIHKFLVDDNVQIYEACNGNQGIELIIDIEVVLDLIIIDLKMDQGDGIAVINMLASEPRFAA
IPIAVISSSDKRTLELVDNIITVLRLNLLGVFAKPINVNDILTPLLEASTDRHHAHQHQSIVQNRAANINVRQLIKDEQL
ILCYQPKINLKTKEIMGFEVLSRLCDQSNGYIYPDVFLPLVNQQGLNSLFSRMVISQALQCWSRQPLLTAFALSINITAD
DLTCDELIEFIIECGREHKHIHLILELTESQEIINQDRVLNSIARLIINNIDISLDDFGKSYSTYDRLDAIPFKEIKIDK
SFVSDMDINHQHYLIVESTIALAQKMHVKVVAEGVETSAIEAILSELGCDVAQGYLYSPPIEGRYLIDWISQYNRECLTH
GY
>Mature_402_residues
MNILIIDDQRFIRETMKADIHKFLVDDNVQIYEACNGNQGIELIIDIEVVLDLIIIDLKMDQGDGIAVINMLASEPRFAA
IPIAVISSSDKRTLELVDNIITVLRLNLLGVFAKPINVNDILTPLLEASTDRHHAHQHQSIVQNRAANINVRQLIKDEQL
ILCYQPKINLKTKEIMGFEVLSRLCDQSNGYIYPDVFLPLVNQQGLNSLFSRMVISQALQCWSRQPLLTAFALSINITAD
DLTCDELIEFIIECGREHKHIHLILELTESQEIINQDRVLNSIARLIINNIDISLDDFGKSYSTYDRLDAIPFKEIKIDK
SFVSDMDINHQHYLIVESTIALAQKMHVKVVAEGVETSAIEAILSELGCDVAQGYLYSPPIEGRYLIDWISQYNRECLTH
GY

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=246, Percent_Identity=32.1138211382114, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1786507, Length=233, Percent_Identity=33.9055793991416, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI87081980, Length=240, Percent_Identity=29.1666666666667, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787541, Length=251, Percent_Identity=28.2868525896414, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=29.0983606557377, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=30.7053941908714, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI87082096, Length=236, Percent_Identity=33.4745762711864, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1790496, Length=257, Percent_Identity=27.6264591439689, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787055, Length=239, Percent_Identity=32.2175732217573, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=27.2357723577236, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788849, Length=258, Percent_Identity=30.6201550387597, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI226510982, Length=235, Percent_Identity=25.9574468085106, Blast_Score=89, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 45611; Mature: 45611

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILIIDDQRFIRETMKADIHKFLVDDNVQIYEACNGNQGIELIIDIEVVLDLIIIDLKM
CEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHEEEEE
DQGDGIAVINMLASEPRFAAIPIAVISSSDKRTLELVDNIITVLRLNLLGVFAKPINVND
CCCCCEEEEEHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
ILTPLLEASTDRHHAHQHQSIVQNRAANINVRQLIKDEQLILCYQPKINLKTKEIMGFEV
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
LSRLCDQSNGYIYPDVFLPLVNQQGLNSLFSRMVISQALQCWSRQPLLTAFALSINITAD
HHHHHCCCCCEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEC
DLTCDELIEFIIECGREHKHIHLILELTESQEIINQDRVLNSIARLIINNIDISLDDFGK
CCCHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
SYSTYDRLDAIPFKEIKIDKSFVSDMDINHQHYLIVESTIALAQKMHVKVVAEGVETSAI
CCCHHHHHCCCCCHHEEECHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHH
EAILSELGCDVAQGYLYSPPIEGRYLIDWISQYNRECLTHGY
HHHHHHHCCHHHCCCEECCCCCCHHHHHHHHHHCHHHHCCCC
>Mature Secondary Structure
MNILIIDDQRFIRETMKADIHKFLVDDNVQIYEACNGNQGIELIIDIEVVLDLIIIDLKM
CEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHEEEEE
DQGDGIAVINMLASEPRFAAIPIAVISSSDKRTLELVDNIITVLRLNLLGVFAKPINVND
CCCCCEEEEEHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
ILTPLLEASTDRHHAHQHQSIVQNRAANINVRQLIKDEQLILCYQPKINLKTKEIMGFEV
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
LSRLCDQSNGYIYPDVFLPLVNQQGLNSLFSRMVISQALQCWSRQPLLTAFALSINITAD
HHHHHCCCCCEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEC
DLTCDELIEFIIECGREHKHIHLILELTESQEIINQDRVLNSIARLIINNIDISLDDFGK
CCCHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
SYSTYDRLDAIPFKEIKIDKSFVSDMDINHQHYLIVESTIALAQKMHVKVVAEGVETSAI
CCCHHHHHCCCCCHHEEECHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHH
EAILSELGCDVAQGYLYSPPIEGRYLIDWISQYNRECLTHGY
HHHHHHHCCHHHCCCEECCCCCCHHHHHHHHHHCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]