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The map label for this gene is tnpR [H]

Identifier: 126174305

GI number: 126174305

Start: 2418269

End: 2418859

Strand: Direct

Name: tnpR [H]

Synonym: Sbal_2084

Alternate gene names: 126174305

Gene position: 2418269-2418859 (Clockwise)

Preceding gene: 126174302

Following gene: 126174308

Centisome position: 47.16

GC content: 47.55

Gene sequence:

>591_bases
ATGTCACGAGTTTTTGCTTATTGCCGTGTATCCACTCTAGAGCAGACCACCGAAAATCAGCGCCGTGAAATTGAAGAGGC
AGGTTTTGCTGTCAAACCCCAGCGACTATTCGAAGAACAGATCAGCGGTTCAGTAACTGCCGGTGAGCGTCCGGGGTTCA
CTAAGCTACTTGACCGCATGGAAAACGGCGATGTACTGATTGTCACAAAATTGGATCGTCTTGGTCGTAATGCGATGGAT
ATCAGAAAAACAGTGGAGCAACTGGCCGGATCAGGTATTCGAGTGCATTGCTTGGCATTGGGTGGTGTTGATTTGACTAG
TCCTGCAGGAAAAATGACGATGCAGGTGATTTCTGCGGTTGCGGAGTTTGAACGGGACCTGCTTCTTGAACGCACTCATT
CTGGTATTGCAAGGGCAAAGGCAGCAGGAAAACGCTTCGGGCGTCCGCCGGTGTTAAATGAAGAACAAAAACAGAGGGTA
CTCGAACGAATTCAGTCTGGTGTAAGTATAAGTGCTATTGCCCGGGAATTCAGAACCACACGGCAAACAATTCTGAGAGT
TAAAGTAAAACAGCAAATACCTGCTGTTTAA

Upstream 100 bases:

>100_bases
GGTTTTGGACACCCTATTCTAAATATGTACGAATATTAGTTAAAATAATTTCGTACATGGCTTATAATTAGTACACCCTT
TTCGTACGAAACATTTAGCT

Downstream 100 bases:

>100_bases
AAAATGGTCTTAGCGTGGGATATTTTCCGTTTTCCAAGCGGACCCCTTTAAGTACAGTTTGTTACCGATTAAAAAAGCCC
ACATCAATGTGGGCTTTTTT

Product: resolvase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MSRVFAYCRVSTLEQTTENQRREIEEAGFAVKPQRLFEEQISGSVTAGERPGFTKLLDRMENGDVLIVTKLDRLGRNAMD
IRKTVEQLAGSGIRVHCLALGGVDLTSPAGKMTMQVISAVAEFERDLLLERTHSGIARAKAAGKRFGRPPVLNEEQKQRV
LERIQSGVSISAIAREFRTTRQTILRVKVKQQIPAV

Sequences:

>Translated_196_residues
MSRVFAYCRVSTLEQTTENQRREIEEAGFAVKPQRLFEEQISGSVTAGERPGFTKLLDRMENGDVLIVTKLDRLGRNAMD
IRKTVEQLAGSGIRVHCLALGGVDLTSPAGKMTMQVISAVAEFERDLLLERTHSGIARAKAAGKRFGRPPVLNEEQKQRV
LERIQSGVSISAIAREFRTTRQTILRVKVKQQIPAV
>Mature_195_residues
SRVFAYCRVSTLEQTTENQRREIEEAGFAVKPQRLFEEQISGSVTAGERPGFTKLLDRMENGDVLIVTKLDRLGRNAMDI
RKTVEQLAGSGIRVHCLALGGVDLTSPAGKMTMQVISAVAEFERDLLLERTHSGIARAKAAGKRFGRPPVLNEEQKQRVL
ERIQSGVSISAIAREFRTTRQTILRVKVKQQIPAV

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787638, Length=196, Percent_Identity=78.5714285714286, Blast_Score=320, Evalue=6e-89,
Organism=Escherichia coli, GI1787827, Length=196, Percent_Identity=78.0612244897959, Blast_Score=318, Evalue=1e-88,
Organism=Escherichia coli, GI1787404, Length=171, Percent_Identity=39.1812865497076, Blast_Score=107, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 21832; Mature: 21700

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: PS00397 RECOMBINASES_1 ; PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRVFAYCRVSTLEQTTENQRREIEEAGFAVKPQRLFEEQISGSVTAGERPGFTKLLDRM
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
ENGDVLIVTKLDRLGRNAMDIRKTVEQLAGSGIRVHCLALGGVDLTSPAGKMTMQVISAV
CCCCEEEEECHHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
AEFERDLLLERTHSGIARAKAAGKRFGRPPVLNEEQKQRVLERIQSGVSISAIAREFRTT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
RQTILRVKVKQQIPAV
HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRVFAYCRVSTLEQTTENQRREIEEAGFAVKPQRLFEEQISGSVTAGERPGFTKLLDRM
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
ENGDVLIVTKLDRLGRNAMDIRKTVEQLAGSGIRVHCLALGGVDLTSPAGKMTMQVISAV
CCCCEEEEECHHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
AEFERDLLLERTHSGIARAKAAGKRFGRPPVLNEEQKQRVLERIQSGVSISAIAREFRTT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
RQTILRVKVKQQIPAV
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027041 [H]