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The map label for this gene is rraA [C]

Identifier: 126174216

GI number: 126174216

Start: 2313400

End: 2313894

Strand: Direct

Name: rraA [C]

Synonym: Sbal_1992

Alternate gene names: 126174216

Gene position: 2313400-2313894 (Clockwise)

Preceding gene: 126174214

Following gene: 126174217

Centisome position: 45.12

GC content: 43.03

Gene sequence:

>495_bases
ATGCTTGATCTACTACCAGATTTATTTGACCACTATCCGTCTAAATTACAGTTACTTCCCCTCGAATTTAAACCCTATGG
CGGTAAGCGGCTTTTTTGGGGCGAGATAGTCATAGTCAAGTGTTTTGAAGATAATTCTAAGGTAAAAGAAATACTTGCAC
AGGATGGGCAAGGAAAAGTTTTGGTTGTCGATGGGGGCGGCTCTCTGCGCCGCGCATTGTTAGGCGATCTCATTGCGCAA
AGCGCGCTAGATAATGGCTGGCAAGGGATAGTGATCAATGGTTGTGTTCGTGATGTAGCCCGATTAAATACTTTTAGTTT
AGGTGTTTATGCCTTAGGGGCCATGCCGATAAAAACCGAGAAGTTAGGTCAAGGCCAAATTAATGTTGCTGTAGATATGG
GCGGCGTGATGGTTACGCCCGGTATGATGCTGTATGCCGATGAAAATGGTATTGCAGTAAGTGATGAAATGTTGAACTTT
GCATTTTTAAATTAA

Upstream 100 bases:

>100_bases
CTGGTTAAAATTAAATAAAAATTCGCTGATTTTTGCTTTGACCTTGTCGGGGTCTACAATTATGGGTAGTCTAAAGTGAT
AGGCTATTATGGAGATTCAA

Downstream 100 bases:

>100_bases
CATTTTAAATGAATTAGTAGCTTTAAATTCAAGTTGTTTTTGATAAGGATATTTATATGAAATTCATTAAGTGGCTCCTG
GCCTTAGTGGTGACGCTCAT

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MLDLLPDLFDHYPSKLQLLPLEFKPYGGKRLFWGEIVIVKCFEDNSKVKEILAQDGQGKVLVVDGGGSLRRALLGDLIAQ
SALDNGWQGIVINGCVRDVARLNTFSLGVYALGAMPIKTEKLGQGQINVAVDMGGVMVTPGMMLYADENGIAVSDEMLNF
AFLN

Sequences:

>Translated_164_residues
MLDLLPDLFDHYPSKLQLLPLEFKPYGGKRLFWGEIVIVKCFEDNSKVKEILAQDGQGKVLVVDGGGSLRRALLGDLIAQ
SALDNGWQGIVINGCVRDVARLNTFSLGVYALGAMPIKTEKLGQGQINVAVDMGGVMVTPGMMLYADENGIAVSDEMLNF
AFLN
>Mature_164_residues
MLDLLPDLFDHYPSKLQLLPLEFKPYGGKRLFWGEIVIVKCFEDNSKVKEILAQDGQGKVLVVDGGGSLRRALLGDLIAQ
SALDNGWQGIVINGCVRDVARLNTFSLGVYALGAMPIKTEKLGQGQINVAVDMGGVMVTPGMMLYADENGIAVSDEMLNF
AFLN

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=154, Percent_Identity=42.2077922077922, Blast_Score=124, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17804; Mature: 17804

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLLPDLFDHYPSKLQLLPLEFKPYGGKRLFWGEIVIVKCFEDNSKVKEILAQDGQGKV
CCCCCHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCHHHHHHHHCCCCCCE
LVVDGGGSLRRALLGDLIAQSALDNGWQGIVINGCVRDVARLNTFSLGVYALGAMPIKTE
EEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCHHEEEEEEECCCCCCHH
KLGQGQINVAVDMGGVMVTPGMMLYADENGIAVSDEMLNFAFLN
CCCCCEEEEEEECCCEEECCCEEEEECCCCEEECHHHEEEEECC
>Mature Secondary Structure
MLDLLPDLFDHYPSKLQLLPLEFKPYGGKRLFWGEIVIVKCFEDNSKVKEILAQDGQGKV
CCCCCHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCHHHHHHHHCCCCCCE
LVVDGGGSLRRALLGDLIAQSALDNGWQGIVINGCVRDVARLNTFSLGVYALGAMPIKTE
EEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCHHEEEEEEECCCCCCHH
KLGQGQINVAVDMGGVMVTPGMMLYADENGIAVSDEMLNFAFLN
CCCCCEEEEEEECCCEEECCCEEEEECCCCEEECHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]