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The map label for this gene is 126173859

Identifier: 126173859

GI number: 126173859

Start: 1896874

End: 1897782

Strand: Reverse

Name: 126173859

Synonym: Sbal_1625

Alternate gene names: NA

Gene position: 1897782-1896874 (Counterclockwise)

Preceding gene: 126173860

Following gene: 126173858

Centisome position: 37.01

GC content: 50.28

Gene sequence:

>909_bases
TTGACTCTGATCCCACTGGTTTATCACGCCAGCTATTCCAAGCTGGCGCTTCCTCCTCACCACAGATTCCCCACGACCAA
GTACGCGCATCTACGGCAGTACTTACTCGAGAATCAGCTTGCCACACTAGCCCAGTTCCACACGCCAACGGCGATGACAG
CGCAGGATGTAATGCAAGTACATCAACGCGAATACGTAGAGCAGTTTATCGCGGGCACGTTGCCAACAGCGGCGCTCAGG
CGGATTGGTTTTCCGTGGAGTGAAGCCTTAGTCGAGCGCACCTTGCATTCTGTGGCTGGCACCACACTCACGGCTTCGTT
GGCCATAAATCAGGGTATTGGCCTGCACCTAACGGGCGGCTACCATCACGCCCATTACGATTTTGGCAGTGGCTATTGTA
TCTTCAACGACCTTATCCTCGCGGCCAGAAATGCCATCGCGAGCCTGCAAGTACACAAGGTACTGATTTTTGATTGCGAT
GTGCATCAAGGTGATGGTAGTGCAACACTCAGCCAGCGACATCAAGGGATAATCAGTTGCTCGATTCACTGCAAAGAGAA
CTTCCCGAGTCGTAAGCAGCATTCCCACCATGATATTGAGCTAACCAAAGGCAGCGATGACAATCTGTATCTCGAAACCG
TGGAGCAAACACTCGCCCTACTCATCCGCATCCATCAGCCAGATCTCATTCTTTATGATGCTGGGGTCGATATCCATCAA
AATGATGATCTCGGCTTGCTCAATATCAGTCAAGAAGGGCTGTTCAGACGGGATTTAACTGTGTTATCAATGGCAAAATC
GGAAAATATTCCAATTGCAGCCGTGATAGGCGGCGGCTATAGCAGAGACGCACTACAATTAAGCCAAAGACACAGCCAAC
TTTTTATTGCGGCAAACCATTTGTGGTAG

Upstream 100 bases:

>100_bases
AATACTGGTGGTTACAAGCGGATGAGAAAACACGTAAAGAATTTATGAGCTGGGCAATTTCACAGCTATAACGACTTGCG
ATAACGAGGTTTAGTCAATA

Downstream 100 bases:

>100_bases
CAAACTCAATGAAAACCGTCATGGAGCATAACGATGCAACTCGAAATCCGTAATTACTACGAAGTTCTTTTAATGGAAAT
ATTGTCAGATGAAGGACTTA

Product: histone deacetylase superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MTLIPLVYHASYSKLALPPHHRFPTTKYAHLRQYLLENQLATLAQFHTPTAMTAQDVMQVHQREYVEQFIAGTLPTAALR
RIGFPWSEALVERTLHSVAGTTLTASLAINQGIGLHLTGGYHHAHYDFGSGYCIFNDLILAARNAIASLQVHKVLIFDCD
VHQGDGSATLSQRHQGIISCSIHCKENFPSRKQHSHHDIELTKGSDDNLYLETVEQTLALLIRIHQPDLILYDAGVDIHQ
NDDLGLLNISQEGLFRRDLTVLSMAKSENIPIAAVIGGGYSRDALQLSQRHSQLFIAANHLW

Sequences:

>Translated_302_residues
MTLIPLVYHASYSKLALPPHHRFPTTKYAHLRQYLLENQLATLAQFHTPTAMTAQDVMQVHQREYVEQFIAGTLPTAALR
RIGFPWSEALVERTLHSVAGTTLTASLAINQGIGLHLTGGYHHAHYDFGSGYCIFNDLILAARNAIASLQVHKVLIFDCD
VHQGDGSATLSQRHQGIISCSIHCKENFPSRKQHSHHDIELTKGSDDNLYLETVEQTLALLIRIHQPDLILYDAGVDIHQ
NDDLGLLNISQEGLFRRDLTVLSMAKSENIPIAAVIGGGYSRDALQLSQRHSQLFIAANHLW
>Mature_301_residues
TLIPLVYHASYSKLALPPHHRFPTTKYAHLRQYLLENQLATLAQFHTPTAMTAQDVMQVHQREYVEQFIAGTLPTAALRR
IGFPWSEALVERTLHSVAGTTLTASLAINQGIGLHLTGGYHHAHYDFGSGYCIFNDLILAARNAIASLQVHKVLIFDCDV
HQGDGSATLSQRHQGIISCSIHCKENFPSRKQHSHHDIELTKGSDDNLYLETVEQTLALLIRIHQPDLILYDAGVDIHQN
DDLGLLNISQEGLFRRDLTVLSMAKSENIPIAAVIGGGYSRDALQLSQRHSQLFIAANHLW

Specific function: Putative deacetylase [H]

COG id: COG0123

COG function: function code BQ; Deacetylases, including yeast histone deacetylase and acetoin utilization protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone deacetylase family [H]

Homologues:

Organism=Homo sapiens, GI217272877, Length=296, Percent_Identity=28.3783783783784, Blast_Score=135, Evalue=3e-32,
Organism=Homo sapiens, GI209862883, Length=272, Percent_Identity=27.9411764705882, Blast_Score=131, Evalue=9e-31,
Organism=Homo sapiens, GI13128860, Length=272, Percent_Identity=24.6323529411765, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI293336691, Length=244, Percent_Identity=23.7704918032787, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI13128862, Length=199, Percent_Identity=27.1356783919598, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193207430, Length=299, Percent_Identity=26.4214046822742, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17537347, Length=181, Percent_Identity=37.0165745856354, Blast_Score=81, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17508561, Length=198, Percent_Identity=28.7878787878788, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17540332, Length=176, Percent_Identity=28.9772727272727, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193206283, Length=176, Percent_Identity=28.9772727272727, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17540334, Length=176, Percent_Identity=28.9772727272727, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323999, Length=254, Percent_Identity=28.3464566929134, Blast_Score=87, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6321244, Length=268, Percent_Identity=26.865671641791, Blast_Score=80, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6325325, Length=261, Percent_Identity=26.8199233716475, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24649807, Length=293, Percent_Identity=25.5972696245734, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24657891, Length=272, Percent_Identity=26.4705882352941, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24644244, Length=266, Percent_Identity=23.3082706766917, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI281360899, Length=265, Percent_Identity=25.6603773584906, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24642144, Length=265, Percent_Identity=25.6603773584906, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24642146, Length=265, Percent_Identity=25.6603773584906, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24642142, Length=265, Percent_Identity=25.6603773584906, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000286 [H]

Pfam domain/function: PF00850 Hist_deacetyl [H]

EC number: NA

Molecular weight: Translated: 33674; Mature: 33543

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLIPLVYHASYSKLALPPHHRFPTTKYAHLRQYLLENQLATLAQFHTPTAMTAQDVMQV
CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
HQREYVEQFIAGTLPTAALRRIGFPWSEALVERTLHSVAGTTLTASLAINQGIGLHLTGG
HHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECC
YHHAHYDFGSGYCIFNDLILAARNAIASLQVHKVLIFDCDVHQGDGSATLSQRHQGIISC
EEEEEEECCCCEEHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCCHHHHHCCCEEEE
SIHCKENFPSRKQHSHHDIELTKGSDDNLYLETVEQTLALLIRIHQPDLILYDAGVDIHQ
EEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHEEECCCCEEEEECCCCEEC
NDDLGLLNISQEGLFRRDLTVLSMAKSENIPIAAVIGGGYSRDALQLSQRHSQLFIAANH
CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECC
LW
CC
>Mature Secondary Structure 
TLIPLVYHASYSKLALPPHHRFPTTKYAHLRQYLLENQLATLAQFHTPTAMTAQDVMQV
EEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
HQREYVEQFIAGTLPTAALRRIGFPWSEALVERTLHSVAGTTLTASLAINQGIGLHLTGG
HHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECC
YHHAHYDFGSGYCIFNDLILAARNAIASLQVHKVLIFDCDVHQGDGSATLSQRHQGIISC
EEEEEEECCCCEEHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCCHHHHHCCCEEEE
SIHCKENFPSRKQHSHHDIELTKGSDDNLYLETVEQTLALLIRIHQPDLILYDAGVDIHQ
EEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHEEECCCCEEEEECCCCEEC
NDDLGLLNISQEGLFRRDLTVLSMAKSENIPIAAVIGGGYSRDALQLSQRHSQLFIAANH
CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECC
LW
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7678591 [H]