| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
Click here to switch to the map view.
The map label for this gene is yhdJ [C]
Identifier: 126173814
GI number: 126173814
Start: 1840395
End: 1842107
Strand: Reverse
Name: yhdJ [C]
Synonym: Sbal_1580
Alternate gene names: 126173814
Gene position: 1842107-1840395 (Counterclockwise)
Preceding gene: 126173815
Following gene: 126173813
Centisome position: 35.93
GC content: 35.2
Gene sequence:
>1713_bases ATGTCTTTTGGCATAAAAAGCAAAGAAAACATAATGTTACCTATTATAAATGCACTAACTAACGTCTTGCAAGCAGATGA TCGGCTTGTAATTGACGGCAAGCTCGCAAAGAATAAAATCGTTGAATTGGCTTTAAACCTTGATCCTGCGCTATTAAAGC TGCTTTTGTCTGATGAGAAACTAAGAAATCACTTCTTCCAAGATGTTGATTGTACATTGATTTTCGATAAAATCGCTTTT CAGCGCTTTGTAAATAACAAATCATTTTTATCTGACAGTTTCACGCAATTCAAAAACAAGATTGGGTTATCTGTTGAACA ACATTATTTAGCTGAAAGCAATGATGTGGTTTTGTCATGGCCATATAAAGATTGTTTTCTTGAAGGTGGGCAAACCAAAG AAGAACAAAAGCGCATCGAGATTTTCTGGAACGAAACGCTTGCACCCGAGCAAGTAGATACACTACTTGAGCCAAAAGCT CTAACAAAATTCACAAAATTTGTTCAAGGTTCTGAGGTCAATGAGTTTGATTTGAATTCAGACGATAACTTAATCATTAG AGGGAATAACCTTCTAGCTTTACACTCTTTAAAAAAGAAATATGCAGGAAAAATAAAGCTTATATACATTGATCCTCCTT ACAATACAGGTTCAGATTCTTTTGGTTACAACGATAACTTTAACCACTCAACGTGGTTAACATTTATGAAAAACAGATTG TCTTGTGCGAAAGAGCTTCTGAGTCCTGATGGCTTTATATGTTGTCATATTGATGATAACGAATCTGCATACCTACGAGT CCTTATGGATGAAGTATTTGGAAGGGATAATTTTCTAACGACCTTCAATATCCGTGTTAGATACGCCGAGAAAACACTAA AACAAGACATGAACTTTCATAAAGAAATCGAATACGTTCATATTTATCAAAGATCACCTGCATCAAAACCTAATTTAGCG ACAAAAGACAATTCAATAGAAAAATATATATATTATTTCCAAGAACTAACCGATGGTACAGAAATGACTTTAGGTGGGAA AAAAGTCATTTTGTTCAATAAAGGGGAATATAAAATTGTCAAAAAAGAAGCTAGTGAAAATGGAAGAAAGGAAGTTTGGG CTTCTGGCACCATACTAGATGGGAACTCTTCTGGAAGGTACTTTAGAGACTTTTTAACTGGTCGGTATGATGTTGATGGT TATGGAGCTGTATATAAAGTATTTGGTGTTGGAGAGGAAGGAAATGGATATAGGTATTTTTCTGGTCCAAATAAGGAGGG GGCGACTAAAGGTAAATACTATCAAAGTATTCCATCTTCCAAAAAAGAAGGTAGTACGTCTACACTTCCAATAAGTAATT TTTATGATTTTGCAGGTAGCTTTGGAAATTGTAGAACAGAAGGAGGGGTCGAATTACGCAGTGGTAAAAAGCCAGAAAAG TTTTTAAAGGTAATTATTAACCATTTTAGTAATCCTGAAGATATTGTTCTCGATTATCATCTAGGATGTGGCTCAACGGC TGCGACAGCTCTCAAATTAGGTAGAAAATTCATTGGAATTGAACAACTTAATTATCAAGAAAATGATCCTATTATTAGGC TAAAAAACGTAGTAAATGGTGACTCAACAGGTATATCAAAAGATGTAAATTGGCAAGGCTATTGCGCGACAATTACCCTG ACCGGTTCAGCGACAATTAGAATGGCCGGTTGA
Upstream 100 bases:
>100_bases TTTTGGGCTAAGAAAAACTAACGATTATTAGGGAGGAGACTTGTTTTAACTTAATGATTTTCATCTCAATTCCTTGTATA ATTAGCCCAATTTTTAACAC
Downstream 100 bases:
>100_bases TCTGATACATTCTGGACAAAGATTCTAAGGGAGTTCTTTGTGCCAGGTCATCGAATTACAGATCAACAAATAAGGCTATT TATGTCTAAACGAAAAGATC
Product: DNA methylase N-4/N-6 domain-containing protein
Products: NA
Alternate protein names: M.HindVIP; HindVIP methyltransferase [H]
Number of amino acids: Translated: 570; Mature: 569
Protein sequence:
>570_residues MSFGIKSKENIMLPIINALTNVLQADDRLVIDGKLAKNKIVELALNLDPALLKLLLSDEKLRNHFFQDVDCTLIFDKIAF QRFVNNKSFLSDSFTQFKNKIGLSVEQHYLAESNDVVLSWPYKDCFLEGGQTKEEQKRIEIFWNETLAPEQVDTLLEPKA LTKFTKFVQGSEVNEFDLNSDDNLIIRGNNLLALHSLKKKYAGKIKLIYIDPPYNTGSDSFGYNDNFNHSTWLTFMKNRL SCAKELLSPDGFICCHIDDNESAYLRVLMDEVFGRDNFLTTFNIRVRYAEKTLKQDMNFHKEIEYVHIYQRSPASKPNLA TKDNSIEKYIYYFQELTDGTEMTLGGKKVILFNKGEYKIVKKEASENGRKEVWASGTILDGNSSGRYFRDFLTGRYDVDG YGAVYKVFGVGEEGNGYRYFSGPNKEGATKGKYYQSIPSSKKEGSTSTLPISNFYDFAGSFGNCRTEGGVELRSGKKPEK FLKVIINHFSNPEDIVLDYHLGCGSTAATALKLGRKFIGIEQLNYQENDPIIRLKNVVNGDSTGISKDVNWQGYCATITL TGSATIRMAG
Sequences:
>Translated_570_residues MSFGIKSKENIMLPIINALTNVLQADDRLVIDGKLAKNKIVELALNLDPALLKLLLSDEKLRNHFFQDVDCTLIFDKIAF QRFVNNKSFLSDSFTQFKNKIGLSVEQHYLAESNDVVLSWPYKDCFLEGGQTKEEQKRIEIFWNETLAPEQVDTLLEPKA LTKFTKFVQGSEVNEFDLNSDDNLIIRGNNLLALHSLKKKYAGKIKLIYIDPPYNTGSDSFGYNDNFNHSTWLTFMKNRL SCAKELLSPDGFICCHIDDNESAYLRVLMDEVFGRDNFLTTFNIRVRYAEKTLKQDMNFHKEIEYVHIYQRSPASKPNLA TKDNSIEKYIYYFQELTDGTEMTLGGKKVILFNKGEYKIVKKEASENGRKEVWASGTILDGNSSGRYFRDFLTGRYDVDG YGAVYKVFGVGEEGNGYRYFSGPNKEGATKGKYYQSIPSSKKEGSTSTLPISNFYDFAGSFGNCRTEGGVELRSGKKPEK FLKVIINHFSNPEDIVLDYHLGCGSTAATALKLGRKFIGIEQLNYQENDPIIRLKNVVNGDSTGISKDVNWQGYCATITL TGSATIRMAG >Mature_569_residues SFGIKSKENIMLPIINALTNVLQADDRLVIDGKLAKNKIVELALNLDPALLKLLLSDEKLRNHFFQDVDCTLIFDKIAFQ RFVNNKSFLSDSFTQFKNKIGLSVEQHYLAESNDVVLSWPYKDCFLEGGQTKEEQKRIEIFWNETLAPEQVDTLLEPKAL TKFTKFVQGSEVNEFDLNSDDNLIIRGNNLLALHSLKKKYAGKIKLIYIDPPYNTGSDSFGYNDNFNHSTWLTFMKNRLS CAKELLSPDGFICCHIDDNESAYLRVLMDEVFGRDNFLTTFNIRVRYAEKTLKQDMNFHKEIEYVHIYQRSPASKPNLAT KDNSIEKYIYYFQELTDGTEMTLGGKKVILFNKGEYKIVKKEASENGRKEVWASGTILDGNSSGRYFRDFLTGRYDVDGY GAVYKVFGVGEEGNGYRYFSGPNKEGATKGKYYQSIPSSKKEGSTSTLPISNFYDFAGSFGNCRTEGGVELRSGKKPEKF LKVIINHFSNPEDIVLDYHLGCGSTAATALKLGRKFIGIEQLNYQENDPIIRLKNVVNGDSTGISKDVNWQGYCATITLT GSATIRMAG
Specific function: Unknown
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR002052 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 64510; Mature: 64379
Theoretical pI: Translated: 7.22; Mature: 7.22
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFGIKSKENIMLPIINALTNVLQADDRLVIDGKLAKNKIVELALNLDPALLKLLLSDEK CCCCCCCCCCEEHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCHHHHHHHHCHHH LRNHFFQDVDCTLIFDKIAFQRFVNNKSFLSDSFTQFKNKIGLSVEQHYLAESNDVVLSW HHHHHHCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEC PYKDCFLEGGQTKEEQKRIEIFWNETLAPEQVDTLLEPKALTKFTKFVQGSEVNEFDLNS CHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCEECCCC DDNLIIRGNNLLALHSLKKKYAGKIKLIYIDPPYNTGSDSFGYNDNFNHSTWLTFMKNRL CCCEEEECCCEEEEHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH SCAKELLSPDGFICCHIDDNESAYLRVLMDEVFGRDNFLTTFNIRVRYAEKTLKQDMNFH HHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEEEEHHHHHHHHCCHH KEIEYVHIYQRSPASKPNLATKDNSIEKYIYYFQELTDGTEMTLGGKKVILFNKGEYKIV HCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCEEEEEECCCEEEE KKEASENGRKEVWASGTILDGNSSGRYFRDFLTGRYDVDGYGAVYKVFGVGEEGNGYRYF ECCCCCCCCCEEEECCEEEECCCCCCHHHHHHCCCCCCCCCCEEEEEEECCCCCCCEEEE SGPNKEGATKGKYYQSIPSSKKEGSTSTLPISNFYDFAGSFGNCRTEGGVELRSGKKPEK CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEECCCCCHHH FLKVIINHFSNPEDIVLDYHLGCGSTAATALKLGRKFIGIEQLNYQENDPIIRLKNVVNG HHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEECCCC DSTGISKDVNWQGYCATITLTGSATIRMAG CCCCCCCCCCCCEEEEEEEEECCEEEEECC >Mature Secondary Structure SFGIKSKENIMLPIINALTNVLQADDRLVIDGKLAKNKIVELALNLDPALLKLLLSDEK CCCCCCCCCEEHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCHHHHHHHHCHHH LRNHFFQDVDCTLIFDKIAFQRFVNNKSFLSDSFTQFKNKIGLSVEQHYLAESNDVVLSW HHHHHHCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEC PYKDCFLEGGQTKEEQKRIEIFWNETLAPEQVDTLLEPKALTKFTKFVQGSEVNEFDLNS CHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCEECCCC DDNLIIRGNNLLALHSLKKKYAGKIKLIYIDPPYNTGSDSFGYNDNFNHSTWLTFMKNRL CCCEEEECCCEEEEHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH SCAKELLSPDGFICCHIDDNESAYLRVLMDEVFGRDNFLTTFNIRVRYAEKTLKQDMNFH HHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEEEEHHHHHHHHCCHH KEIEYVHIYQRSPASKPNLATKDNSIEKYIYYFQELTDGTEMTLGGKKVILFNKGEYKIV HCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCEEEEEECCCEEEE KKEASENGRKEVWASGTILDGNSSGRYFRDFLTGRYDVDGYGAVYKVFGVGEEGNGYRYF ECCCCCCCCCEEEECCEEEECCCCCCHHHHHHCCCCCCCCCCEEEEEEECCCCCCCEEEE SGPNKEGATKGKYYQSIPSSKKEGSTSTLPISNFYDFAGSFGNCRTEGGVELRSGKKPEK CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEECCCCCHHH FLKVIINHFSNPEDIVLDYHLGCGSTAATALKLGRKFIGIEQLNYQENDPIIRLKNVVNG HHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEECCCC DSTGISKDVNWQGYCATITLTGSATIRMAG CCCCCCCCCCCCEEEEEEEEECCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]