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The map label for this gene is cph2 [H]

Identifier: 126173751

GI number: 126173751

Start: 1759510

End: 1760538

Strand: Reverse

Name: cph2 [H]

Synonym: Sbal_1513

Alternate gene names: 126173751

Gene position: 1760538-1759510 (Counterclockwise)

Preceding gene: 126173752

Following gene: 126173750

Centisome position: 34.34

GC content: 49.76

Gene sequence:

>1029_bases
ATGACAAGCTCACCTAAACAGACTCGCTCACAACATCCATTATCACTTGTGGGTGAAGACAATGGCTTACAGTGTACTGC
GCAGCAAGGCTTGGTCGAGCCCGCATTGCCGTTAACCTTCTTCGAGCATGCCTCGATTGAAACGATTCAACAGTTTATTC
AGCATCTGACCGAGCCGGTGATTATCGTCAATGCCCAAGGTTACATTTACTTTAGCAATAGCAAAGGTGCTGACTTACTG
ACGTGCCCGCAGGCCAGTTTGAAGGGACAAGATTGGCGCAACTTTTTGACCGAGCACCATCAAGCTCGCTACGACAATCT
GCTGAGCAATGATATTAAATTAGGCAAAAACTGCGGCATTCCAGTGCAGCACTGCGCCGAAGAAATCACCCTCATTACCG
CATCAGGCAAAGCAAAAGATGTCGAACTCTCCATTTCCTACATCCCCAGCCATGAACCTCTGTTCGTGATGATGATGCAC
GATTTAACGCAGCACAAAGCGGAGAATCAAAAGCTGCGTAAATTGGCTGCCACGGATTCACTGACTGGGCTGGCGAACCG
CCGATACTTCGACGAAATGCTGCATCACTATTGGGAAGAATGCACGGGTAAGCTGCGCCCTATCAGCGTGGTGATTATCG
ATGTGGATTATTTCAAAGTGTTTAACGACCAATTCGGCCATATCCAAGGCGACGAATGTCTACGTAAGATTGCCAAAGTG
ATTGCTGACATAGTGCCAATAGACATTGGCCTGGCAGCGCGTTACGGCGGCGAAGAATTCGCGCTAATACTACCAAGCCA
CAATGCCAAAATGGCACTGACGATTGCCCAAAAAGTGCAGCAAGGGATTAATGATCTGCGCTTTACTGAGCAAGGCCTGC
GCGACTATGTCTCTGTGAGCGCGAGCCAAGGGATTGCGAGTGAAATCAATGGCCAGTTCCGTACCTCACTCGCCATGCTG
TGCGCCGCCGATACCGCATTGTATCGCGCCAAAGCCGATGGCCGTGACAGGATCAATACGTCGCTTTAA

Upstream 100 bases:

>100_bases
CGGAAGGTAAGCAGAAGGTATCTTTTCTTTGCGAAGAATAAAGTCATCATCAGAAAAGCGCTTAGCGCAGATGACATTAG
GTTCACGGAGAATGATAACA

Downstream 100 bases:

>100_bases
TCCCCATTAATTGGCGACTTATTTACCCGCAACTGATTTACCCAAAACATAGTTACCCGCGGCTTAGTTATCCGCGACTT
AGTTACCTGCGATGGATTAA

Product: diguanylate cyclase with PAS/PAC sensor

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTSSPKQTRSQHPLSLVGEDNGLQCTAQQGLVEPALPLTFFEHASIETIQQFIQHLTEPVIIVNAQGYIYFSNSKGADLL
TCPQASLKGQDWRNFLTEHHQARYDNLLSNDIKLGKNCGIPVQHCAEEITLITASGKAKDVELSISYIPSHEPLFVMMMH
DLTQHKAENQKLRKLAATDSLTGLANRRYFDEMLHHYWEECTGKLRPISVVIIDVDYFKVFNDQFGHIQGDECLRKIAKV
IADIVPIDIGLAARYGGEEFALILPSHNAKMALTIAQKVQQGINDLRFTEQGLRDYVSVSASQGIASEINGQFRTSLAML
CAADTALYRAKADGRDRINTSL

Sequences:

>Translated_342_residues
MTSSPKQTRSQHPLSLVGEDNGLQCTAQQGLVEPALPLTFFEHASIETIQQFIQHLTEPVIIVNAQGYIYFSNSKGADLL
TCPQASLKGQDWRNFLTEHHQARYDNLLSNDIKLGKNCGIPVQHCAEEITLITASGKAKDVELSISYIPSHEPLFVMMMH
DLTQHKAENQKLRKLAATDSLTGLANRRYFDEMLHHYWEECTGKLRPISVVIIDVDYFKVFNDQFGHIQGDECLRKIAKV
IADIVPIDIGLAARYGGEEFALILPSHNAKMALTIAQKVQQGINDLRFTEQGLRDYVSVSASQGIASEINGQFRTSLAML
CAADTALYRAKADGRDRINTSL
>Mature_341_residues
TSSPKQTRSQHPLSLVGEDNGLQCTAQQGLVEPALPLTFFEHASIETIQQFIQHLTEPVIIVNAQGYIYFSNSKGADLLT
CPQASLKGQDWRNFLTEHHQARYDNLLSNDIKLGKNCGIPVQHCAEEITLITASGKAKDVELSISYIPSHEPLFVMMMHD
LTQHKAENQKLRKLAATDSLTGLANRRYFDEMLHHYWEECTGKLRPISVVIIDVDYFKVFNDQFGHIQGDECLRKIAKVI
ADIVPIDIGLAARYGGEEFALILPSHNAKMALTIAQKVQQGINDLRFTEQGLRDYVSVSASQGIASEINGQFRTSLAMLC
AADTALYRAKADGRDRINTSL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=213, Percent_Identity=32.8638497652582, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788381, Length=217, Percent_Identity=30.4147465437788, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1787802, Length=137, Percent_Identity=41.6058394160584, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081881, Length=189, Percent_Identity=32.8042328042328, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787541, Length=176, Percent_Identity=34.6590909090909, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=33.7349397590361, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=33.5329341317365, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=30.5882352941176, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787056, Length=167, Percent_Identity=34.1317365269461, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=29.1925465838509, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081977, Length=186, Percent_Identity=31.1827956989247, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1788085, Length=196, Percent_Identity=29.5918367346939, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 38115; Mature: 37984

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSPKQTRSQHPLSLVGEDNGLQCTAQQGLVEPALPLTFFEHASIETIQQFIQHLTEPV
CCCCCCCHHCCCCEEEEECCCCCEEEHHCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCE
IIVNAQGYIYFSNSKGADLLTCPQASLKGQDWRNFLTEHHQARYDNLLSNDIKLGKNCGI
EEEECCEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PVQHCAEEITLITASGKAKDVELSISYIPSHEPLFVMMMHDLTQHKAENQKLRKLAATDS
CHHHHHHHEEEEEECCCCCEEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
LTGLANRRYFDEMLHHYWEECTGKLRPISVVIIDVDYFKVFNDQFGHIQGDECLRKIAKV
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHCCCCCCHHHHHHHHHHH
IADIVPIDIGLAARYGGEEFALILPSHNAKMALTIAQKVQQGINDLRFTEQGLRDYVSVS
HHHHHCCCCCCEEECCCCEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASQGIASEINGQFRTSLAMLCAADTALYRAKADGRDRINTSL
HCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TSSPKQTRSQHPLSLVGEDNGLQCTAQQGLVEPALPLTFFEHASIETIQQFIQHLTEPV
CCCCCCHHCCCCEEEEECCCCCEEEHHCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCE
IIVNAQGYIYFSNSKGADLLTCPQASLKGQDWRNFLTEHHQARYDNLLSNDIKLGKNCGI
EEEECCEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PVQHCAEEITLITASGKAKDVELSISYIPSHEPLFVMMMHDLTQHKAENQKLRKLAATDS
CHHHHHHHEEEEEECCCCCEEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
LTGLANRRYFDEMLHHYWEECTGKLRPISVVIIDVDYFKVFNDQFGHIQGDECLRKIAKV
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHCCCCCCHHHHHHHHHHH
IADIVPIDIGLAARYGGEEFALILPSHNAKMALTIAQKVQQGINDLRFTEQGLRDYVSVS
HHHHHCCCCCCEEECCCCEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASQGIASEINGQFRTSLAMLCAADTALYRAKADGRDRINTSL
HCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]