Click here to switch to the map view.

The map label for this gene is ynbD [C]

Identifier: 126173657

GI number: 126173657

Start: 1636186

End: 1637877

Strand: Reverse

Name: ynbD [C]

Synonym: Sbal_1419

Alternate gene names: 126173657

Gene position: 1637877-1636186 (Counterclockwise)

Preceding gene: 126173658

Following gene: 126173656

Centisome position: 31.94

GC content: 47.99

Gene sequence:

>1692_bases
ATGCTAAGCAAAATCCACATCAAATATTTCTACTTAGCAGGTGCCGTACTGCTAGCCTATTTTGCGGTAACGGGCACGTC
TCCCCTGCTCACCTTTATTTGGGCTTGGACAAGCCTGTCGCTATTTTTAGTCGGTTCAGCCTATTGGTTTAATCTCGCCA
GCATTTTTAGAAAGCGCCAAGATGGCACTATCCCTTGGTATATTCGCTGGGGCTTTATTCCGTTTCTATTGGGCTGCCGG
CTGTATAACCATTGGGCGAGAAAACGCGACTCAGTGCCGTCGATGCAAAAGATAGATGAGCAGTTGTATCTCGGCTGCCG
ATTATTTTCTGCGGATCTGGAGAAAATCAAAGCCAATAAGATCACCGCAATTCTTGATGTGACCGCCGAATTTGATGGCT
TAGATTGGTCGCAGTTTGAAGATCATATCGAGTATTTAAACATCCCCATCCTCGACCATAGCGTGCCGACCAGCGCTCAG
CTCAATCAAGCCGTTAACTGGTTGCATCGCCAAGTGCGCGCCAATAAACAGGTGCTGATCCACTGTGCTATGGGGCGCGG
TCGTTCAGTACTGGTGCTCGCCGCCTATTTAGTCTGTAAAGATAAACAGCGTAACTTCGCCGAAGTATTACAACAAATTA
AGCAAGTCCGCAAAACCGCGGGCTTAAACAAATGGCAATTACGCGCCCTTGAACACATGCTCAAGCAAGGCAAAATCAAC
ATCCATAAAGTGGCGTGGATTATCGCCAACCCTGTCTCTGGCGGCGGCAAATGGCAACAATATGGCGAGCAAATCCAAGA
TGAACTAAAAGCCTATTTTGACCTAACGTTAAAGCTCACTACCGAAAATATCAGCGCAAATACCTTCGCCAAAAAAGCCC
GCAATAGCGGCGCAGATATCATTATTGCCTGTGGTGGCGATGGCACAGTGACAGAGGTAGCATCGGAAATAGTGAACACT
GATATCGACTTAGGGATCATTCCGTTAGGCACGACTAACGCCCTCAGCCACGCGCTATTTGGTTTAGGCAGTAAGCTCAT
TCCTGTCTCTCAGGCGCTGGACAATATTATCCAAGGGCATTACCAAGCCATTGATACAGCTCGTTGTAATGAACAATTAG
TCTTGTTACTTGTGGGGATTGGCTTTGAACAGCAGATGATTGAATCTGCCAACCGTGAACGTAAAAATGCCCTCGGCCAG
TTTGCCTACCTCGATGGTTTATGGCGCGCCGTCAATGCCGATATCACTTTAACCATACAGCTCAGCTTAGATGATGCCGA
GCCCACAACATTGACCACCCATAGCCTCATTGTTGCCAATGCCGCCCCGTTTACCAGCGTATTAGCGCAGGGCGATGGCG
AGCCAAATATGACAGATGGCCTGCTCGATATTACCTGGTTAGATTCGGGGGATGAACCTAAGGAGCAGCTCCTTAGTCTG
GCCGAATTAGCCATTGCTGGATGGGTAAAAGAAGGTAATAAAGACACACATTCAAAGCGACCTAGCGCGCCTTCTACCGC
GACCAAAGTCCACCACGCCCATGCGAAAAAAGTGAGCATTAGCAGTCAGCCCAAATGTAAATATGTGATTGATGGCGAAA
TCTTTGAACCCGCGGATCTCACTATTGAAGTCCAACCCGCATCCCTTAAGGTGTTTGTGCCTTATCAGGAAATAACTGAA
GAGGATGGGTGA

Upstream 100 bases:

>100_bases
AACTTGAGTTAGAACCTGATTTCAACGACGCGATTCACCGATGCAGTCAGCCGTTTAACATGCAGCGGTAAAATCAAATG
AACAGCATTGGAGGGCGCGT

Downstream 100 bases:

>100_bases
CGGCTCAATGAGGCCAAAAATCCGAGTCGCACCCTTCCTATTGTCAAAATAATATTGAAACAGAACCGATTTTTACACTC
TTTTTTTTGTAAATAATAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 563

Protein sequence:

>563_residues
MLSKIHIKYFYLAGAVLLAYFAVTGTSPLLTFIWAWTSLSLFLVGSAYWFNLASIFRKRQDGTIPWYIRWGFIPFLLGCR
LYNHWARKRDSVPSMQKIDEQLYLGCRLFSADLEKIKANKITAILDVTAEFDGLDWSQFEDHIEYLNIPILDHSVPTSAQ
LNQAVNWLHRQVRANKQVLIHCAMGRGRSVLVLAAYLVCKDKQRNFAEVLQQIKQVRKTAGLNKWQLRALEHMLKQGKIN
IHKVAWIIANPVSGGGKWQQYGEQIQDELKAYFDLTLKLTTENISANTFAKKARNSGADIIIACGGDGTVTEVASEIVNT
DIDLGIIPLGTTNALSHALFGLGSKLIPVSQALDNIIQGHYQAIDTARCNEQLVLLLVGIGFEQQMIESANRERKNALGQ
FAYLDGLWRAVNADITLTIQLSLDDAEPTTLTTHSLIVANAAPFTSVLAQGDGEPNMTDGLLDITWLDSGDEPKEQLLSL
AELAIAGWVKEGNKDTHSKRPSAPSTATKVHHAHAKKVSISSQPKCKYVIDGEIFEPADLTIEVQPASLKVFVPYQEITE
EDG

Sequences:

>Translated_563_residues
MLSKIHIKYFYLAGAVLLAYFAVTGTSPLLTFIWAWTSLSLFLVGSAYWFNLASIFRKRQDGTIPWYIRWGFIPFLLGCR
LYNHWARKRDSVPSMQKIDEQLYLGCRLFSADLEKIKANKITAILDVTAEFDGLDWSQFEDHIEYLNIPILDHSVPTSAQ
LNQAVNWLHRQVRANKQVLIHCAMGRGRSVLVLAAYLVCKDKQRNFAEVLQQIKQVRKTAGLNKWQLRALEHMLKQGKIN
IHKVAWIIANPVSGGGKWQQYGEQIQDELKAYFDLTLKLTTENISANTFAKKARNSGADIIIACGGDGTVTEVASEIVNT
DIDLGIIPLGTTNALSHALFGLGSKLIPVSQALDNIIQGHYQAIDTARCNEQLVLLLVGIGFEQQMIESANRERKNALGQ
FAYLDGLWRAVNADITLTIQLSLDDAEPTTLTTHSLIVANAAPFTSVLAQGDGEPNMTDGLLDITWLDSGDEPKEQLLSL
AELAIAGWVKEGNKDTHSKRPSAPSTATKVHHAHAKKVSISSQPKCKYVIDGEIFEPADLTIEVQPASLKVFVPYQEITE
EDG
>Mature_563_residues
MLSKIHIKYFYLAGAVLLAYFAVTGTSPLLTFIWAWTSLSLFLVGSAYWFNLASIFRKRQDGTIPWYIRWGFIPFLLGCR
LYNHWARKRDSVPSMQKIDEQLYLGCRLFSADLEKIKANKITAILDVTAEFDGLDWSQFEDHIEYLNIPILDHSVPTSAQ
LNQAVNWLHRQVRANKQVLIHCAMGRGRSVLVLAAYLVCKDKQRNFAEVLQQIKQVRKTAGLNKWQLRALEHMLKQGKIN
IHKVAWIIANPVSGGGKWQQYGEQIQDELKAYFDLTLKLTTENISANTFAKKARNSGADIIIACGGDGTVTEVASEIVNT
DIDLGIIPLGTTNALSHALFGLGSKLIPVSQALDNIIQGHYQAIDTARCNEQLVLLLVGIGFEQQMIESANRERKNALGQ
FAYLDGLWRAVNADITLTIQLSLDDAEPTTLTTHSLIVANAAPFTSVLAQGDGEPNMTDGLLDITWLDSGDEPKEQLLSL
AELAIAGWVKEGNKDTHSKRPSAPSTATKVHHAHAKKVSISSQPKCKYVIDGEIFEPADLTIEVQPASLKVFVPYQEITE
EDG

Specific function: Unknown

COG id: COG1597

COG function: function code IR; Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DAGKc domain [H]

Homologues:

Organism=Escherichia coli, GI1787679, Length=183, Percent_Identity=31.6939890710383, Blast_Score=73, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001206
- InterPro:   IPR004363
- InterPro:   IPR018148
- InterPro:   IPR011607 [H]

Pfam domain/function: PF00781 DAGK_cat; PF02142 MGS [H]

EC number: NA

Molecular weight: Translated: 62582; Mature: 62582

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50056 TYR_PHOSPHATASE_2 ; PS50054 TYR_PHOSPHATASE_DUAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSKIHIKYFYLAGAVLLAYFAVTGTSPLLTFIWAWTSLSLFLVGSAYWFNLASIFRKRQ
CCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DGTIPWYIRWGFIPFLLGCRLYNHWARKRDSVPSMQKIDEQLYLGCRLFSADLEKIKANK
CCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
ITAILDVTAEFDGLDWSQFEDHIEYLNIPILDHSVPTSAQLNQAVNWLHRQVRANKQVLI
EEEEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEE
HCAMGRGRSVLVLAAYLVCKDKQRNFAEVLQQIKQVRKTAGLNKWQLRALEHMLKQGKIN
EEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCE
IHKVAWIIANPVSGGGKWQQYGEQIQDELKAYFDLTLKLTTENISANTFAKKARNSGADI
EEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHCCCCCCE
IIACGGDGTVTEVASEIVNTDIDLGIIPLGTTNALSHALFGLGSKLIPVSQALDNIIQGH
EEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
YQAIDTARCNEQLVLLLVGIGFEQQMIESANRERKNALGQFAYLDGLWRAVNADITLTIQ
HHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
LSLDDAEPTTLTTHSLIVANAAPFTSVLAQGDGEPNMTDGLLDITWLDSGDEPKEQLLSL
EEECCCCCCEEEECEEEEECCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHH
AELAIAGWVKEGNKDTHSKRPSAPSTATKVHHAHAKKVSISSQPKCKYVIDGEIFEPADL
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCEEEEECCCEECCCCC
TIEVQPASLKVFVPYQEITEEDG
EEEEECCEEEEEECHHHHCCCCC
>Mature Secondary Structure
MLSKIHIKYFYLAGAVLLAYFAVTGTSPLLTFIWAWTSLSLFLVGSAYWFNLASIFRKRQ
CCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DGTIPWYIRWGFIPFLLGCRLYNHWARKRDSVPSMQKIDEQLYLGCRLFSADLEKIKANK
CCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
ITAILDVTAEFDGLDWSQFEDHIEYLNIPILDHSVPTSAQLNQAVNWLHRQVRANKQVLI
EEEEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEE
HCAMGRGRSVLVLAAYLVCKDKQRNFAEVLQQIKQVRKTAGLNKWQLRALEHMLKQGKIN
EEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCE
IHKVAWIIANPVSGGGKWQQYGEQIQDELKAYFDLTLKLTTENISANTFAKKARNSGADI
EEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHCCCCCCE
IIACGGDGTVTEVASEIVNTDIDLGIIPLGTTNALSHALFGLGSKLIPVSQALDNIIQGH
EEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
YQAIDTARCNEQLVLLLVGIGFEQQMIESANRERKNALGQFAYLDGLWRAVNADITLTIQ
HHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
LSLDDAEPTTLTTHSLIVANAAPFTSVLAQGDGEPNMTDGLLDITWLDSGDEPKEQLLSL
EEECCCCCCEEEECEEEEECCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHH
AELAIAGWVKEGNKDTHSKRPSAPSTATKVHHAHAKKVSISSQPKCKYVIDGEIFEPADL
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCEEEEECCCEECCCCC
TIEVQPASLKVFVPYQEITEEDG
EEEEECCEEEEEECHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]