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The map label for this gene is ydeD [H]

Identifier: 125624435

GI number: 125624435

Start: 1612916

End: 1613815

Strand: Reverse

Name: ydeD [H]

Synonym: llmg_1636

Alternate gene names: 125624435

Gene position: 1613815-1612916 (Counterclockwise)

Preceding gene: 125624436

Following gene: 125624434

Centisome position: 63.8

GC content: 36.67

Gene sequence:

>900_bases
ATGAATGTAAAAAAACAAATTTTTAAAGGCACGCTCTATGCAGTTGTTGCCGGTTGTATGTGGGGAATTTCTGGCATTTT
TGGTCAGCTTTTTTTCCGTGACTATCATGGTAGCCCACTTTGGATTACATCAACACGTTTAACGATTGCTGGTATTATTT
TACTGGTCATGTCTTATTCGCGAGACCATAAGCGTTTTTTTGATGTCTGGAAATCAAAAAAGAACATGCCAACGCTCTTT
TTGTATGTTTTTGGTGGAGTTTTCTCTGTTCAGTATTTTTATTATGTTGCCATTCAATTGTCTAACAGTGCCACGGCGAC
AATTTTACAATATACAGCACCCGTTTTTATTATGCTTTATTTATTCATTTTCCAAAGACAAGTGCCAAAACCTAAATCGG
TCTTATTTGTCATTTTAGCAATGATAGGTGTTTTTTTATTGATTACAAATGGAAATATCAAACATCTTTCAATTAGTCCA
CTTGCCCTTGTATCAGGCCTTCTTGCGGGTGTTGCGGTCGTAATCTATTCTATCATTCCACGTCCTTTATTGGATAAGTA
TGGGGCGCTCAATATGACTGGATGGGGAATGATGCTTGCGGGAATTGCTTGTAATATCTTTTATCCAGTCTGGCGGATTA
ATTTCCGAATTGAACCCCTCTCAATTTTTTACGTTTTGACGATTTCTATTGTGGGAACAGCATTGGCTTTTTTGTTGCTT
TTAAGAGCATTCCAGCTAATATCACCTCTTGTTGTTTCGGTTGCAACGGCCACTGAACCACTAACCTCTGTCTTTTTAAG
TATTCCCTTATTTGGATTAAAATTAACACTACTAGAAATGGTGGGGATTGTGATGGTTATTGTTTCAGTTATTCTTTTAT
CAAAATCAGAACAAGCTTAA

Upstream 100 bases:

>100_bases
GTTTTGCTTGAAACTCCTTTAGAGTTAACAATGTAATATATAAAAATATAATGATGATTGAACCCCGTGAAACCCGCTTG
ATATATGCTATAATATAAAA

Downstream 100 bases:

>100_bases
AAGAAACCAGTAGGTTTCTTTTTCTTATATACAAGATTTTGACTTTTTTCAGAATATTCTATGATATAATAAATGCAAAG
ATAGCATTTAACATCAAAAA

Product: putative permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MNVKKQIFKGTLYAVVAGCMWGISGIFGQLFFRDYHGSPLWITSTRLTIAGIILLVMSYSRDHKRFFDVWKSKKNMPTLF
LYVFGGVFSVQYFYYVAIQLSNSATATILQYTAPVFIMLYLFIFQRQVPKPKSVLFVILAMIGVFLLITNGNIKHLSISP
LALVSGLLAGVAVVIYSIIPRPLLDKYGALNMTGWGMMLAGIACNIFYPVWRINFRIEPLSIFYVLTISIVGTALAFLLL
LRAFQLISPLVVSVATATEPLTSVFLSIPLFGLKLTLLEMVGIVMVIVSVILLSKSEQA

Sequences:

>Translated_299_residues
MNVKKQIFKGTLYAVVAGCMWGISGIFGQLFFRDYHGSPLWITSTRLTIAGIILLVMSYSRDHKRFFDVWKSKKNMPTLF
LYVFGGVFSVQYFYYVAIQLSNSATATILQYTAPVFIMLYLFIFQRQVPKPKSVLFVILAMIGVFLLITNGNIKHLSISP
LALVSGLLAGVAVVIYSIIPRPLLDKYGALNMTGWGMMLAGIACNIFYPVWRINFRIEPLSIFYVLTISIVGTALAFLLL
LRAFQLISPLVVSVATATEPLTSVFLSIPLFGLKLTLLEMVGIVMVIVSVILLSKSEQA
>Mature_299_residues
MNVKKQIFKGTLYAVVAGCMWGISGIFGQLFFRDYHGSPLWITSTRLTIAGIILLVMSYSRDHKRFFDVWKSKKNMPTLF
LYVFGGVFSVQYFYYVAIQLSNSATATILQYTAPVFIMLYLFIFQRQVPKPKSVLFVILAMIGVFLLITNGNIKHLSISP
LALVSGLLAGVAVVIYSIIPRPLLDKYGALNMTGWGMMLAGIACNIFYPVWRINFRIEPLSIFYVLTISIVGTALAFLLL
LRAFQLISPLVVSVATATEPLTSVFLSIPLFGLKLTLLEMVGIVMVIVSVILLSKSEQA

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1790092, Length=290, Percent_Identity=33.1034482758621, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33278; Mature: 33278

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVKKQIFKGTLYAVVAGCMWGISGIFGQLFFRDYHGSPLWITSTRLTIAGIILLVMSYS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCC
RDHKRFFDVWKSKKNMPTLFLYVFGGVFSVQYFYYVAIQLSNSATATILQYTAPVFIMLY
CHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHH
LFIFQRQVPKPKSVLFVILAMIGVFLLITNGNIKHLSISPLALVSGLLAGVAVVIYSIIP
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCC
RPLLDKYGALNMTGWGMMLAGIACNIFYPVWRINFRIEPLSIFYVLTISIVGTALAFLLL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
LRAFQLISPLVVSVATATEPLTSVFLSIPLFGLKLTLLEMVGIVMVIVSVILLSKSEQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNVKKQIFKGTLYAVVAGCMWGISGIFGQLFFRDYHGSPLWITSTRLTIAGIILLVMSYS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCC
RDHKRFFDVWKSKKNMPTLFLYVFGGVFSVQYFYYVAIQLSNSATATILQYTAPVFIMLY
CHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHH
LFIFQRQVPKPKSVLFVILAMIGVFLLITNGNIKHLSISPLALVSGLLAGVAVVIYSIIP
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCC
RPLLDKYGALNMTGWGMMLAGIACNIFYPVWRINFRIEPLSIFYVLTISIVGTALAFLLL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
LRAFQLISPLVVSVATATEPLTSVFLSIPLFGLKLTLLEMVGIVMVIVSVILLSKSEQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]