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The map label for this gene is abnA [H]

Identifier: 125624409

GI number: 125624409

Start: 1580420

End: 1581421

Strand: Reverse

Name: abnA [H]

Synonym: llmg_1608

Alternate gene names: 125624409

Gene position: 1581421-1580420 (Counterclockwise)

Preceding gene: 125624410

Following gene: 125624408

Centisome position: 62.52

GC content: 39.92

Gene sequence:

>1002_bases
ATGATTTCAAATAAAATGAGAGCTTTGAAAGTTATCATACGTATTGTTGTGCTTCTGGGATTACTGTTTCTGATTGGTTT
CTTTTTTCCGCATGAACAAAAAGAACAAGTTAATCTTGCGACAGATAATTTCCCAGACCCAACAGGAATTTATGAACAAG
GCACTTATTATGCTTATGCGACATCGGCAGAGGGTTTGAATATTCCATTGGCAAGGTCAAAGTCAGGGAAAAATTATCAA
ATTGTTGGAGATGCTTTGCCAGCTTTGCCAGACTGGGCACAGGGGAGTATTTGGGCACCCCACATCAGTCAAGTAGGAAA
ACGTTATTTACTTTACTTTTCGGCTATTGATAAAAAGTCGAAAAAACGCTCTATTGGTCTGGCTTGGGCAAATAAGGCGC
AAGGACCTTTTAAAGCGGAAGAAAAGCGCGTGGCCACAGATAATTCTGCGGGTGGTCTGATTGATCCAGATACTTTTCAA
GATAAGGATGGGCAGAACTATCTCCTTTATAAAAATGATGGGAATGCAATAGGTAAAACGAGTTCTTTGTGGCTTCAAAA
ACTAAGTAAAAATGGTTTGGAGGTTACAGGGAAAGCAGAAAGACTTTTGACAAATACAGAGGTTGCAAATCCGAATGATA
ATGGGAAAGCAGGAGTTGTATCAACGATTGAAGGACCTTATTTGACCAAAGCACCTGATGGAACTTATGTTTTGCTATTT
TCAGGGAATTCGTATGTCACTTCTGATTATTTTACAGGATATGCAATAAGTAAAAAGTTGTCAGGACCTTATCAATATCA
GGGGGCTTTGCTCACAACGGCATCGTTGAAAAATCAAATTGTTGGACCTGGGGGTGCTGAGCTTGTACAAGGAAAGGGTT
CTAAGGAAACGTTGCTTTTGCATGGTTGGATTAAGGGCGTTAATACGGCAGAAAGCAGTCGTCAACTCTATGAATTATCA
TTTTTGTGGGAAGAAGGACATGTCCCCGAGGTAACGAAATAA

Upstream 100 bases:

>100_bases
AACTTAATCCGAGTTATGACAGTGGCGATCACCTACATCCCAATAATGCTGGCTATAAGGCGATGGGGAATGCAGTTAAT
CTGAGTTTGTTTAAGTGATT

Downstream 100 bases:

>100_bases
AGAGTTAATAAGCACTGAGAGACCTTAATGTTCTCGTATTGAATAGTTATGGATATGTAAAGAGATGATGAGTGATATGG
AAAAAGGAGGAAATTAATGA

Product: putative glycosyl hydrolases

Products: NA

Alternate protein names: Endo-1,5-alpha-L-arabinanase; ABN; Endo-arabinanase [H]

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MISNKMRALKVIIRIVVLLGLLFLIGFFFPHEQKEQVNLATDNFPDPTGIYEQGTYYAYATSAEGLNIPLARSKSGKNYQ
IVGDALPALPDWAQGSIWAPHISQVGKRYLLYFSAIDKKSKKRSIGLAWANKAQGPFKAEEKRVATDNSAGGLIDPDTFQ
DKDGQNYLLYKNDGNAIGKTSSLWLQKLSKNGLEVTGKAERLLTNTEVANPNDNGKAGVVSTIEGPYLTKAPDGTYVLLF
SGNSYVTSDYFTGYAISKKLSGPYQYQGALLTTASLKNQIVGPGGAELVQGKGSKETLLLHGWIKGVNTAESSRQLYELS
FLWEEGHVPEVTK

Sequences:

>Translated_333_residues
MISNKMRALKVIIRIVVLLGLLFLIGFFFPHEQKEQVNLATDNFPDPTGIYEQGTYYAYATSAEGLNIPLARSKSGKNYQ
IVGDALPALPDWAQGSIWAPHISQVGKRYLLYFSAIDKKSKKRSIGLAWANKAQGPFKAEEKRVATDNSAGGLIDPDTFQ
DKDGQNYLLYKNDGNAIGKTSSLWLQKLSKNGLEVTGKAERLLTNTEVANPNDNGKAGVVSTIEGPYLTKAPDGTYVLLF
SGNSYVTSDYFTGYAISKKLSGPYQYQGALLTTASLKNQIVGPGGAELVQGKGSKETLLLHGWIKGVNTAESSRQLYELS
FLWEEGHVPEVTK
>Mature_333_residues
MISNKMRALKVIIRIVVLLGLLFLIGFFFPHEQKEQVNLATDNFPDPTGIYEQGTYYAYATSAEGLNIPLARSKSGKNYQ
IVGDALPALPDWAQGSIWAPHISQVGKRYLLYFSAIDKKSKKRSIGLAWANKAQGPFKAEEKRVATDNSAGGLIDPDTFQ
DKDGQNYLLYKNDGNAIGKTSSLWLQKLSKNGLEVTGKAERLLTNTEVANPNDNGKAGVVSTIEGPYLTKAPDGTYVLLF
SGNSYVTSDYFTGYAISKKLSGPYQYQGALLTTASLKNQIVGPGGAELVQGKGSKETLLLHGWIKGVNTAESSRQLYELS
FLWEEGHVPEVTK

Specific function: Catalyzes the hydrolysis of the alpha-1,5-linked L- arabinofuranoside backbone. Its preferred substrate is linear 1,5- alpha-L-arabinan. It is also active towards branched sugar beet arabinan, but inactive towards larch wood arabinogalactan, wheat arabino

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006710
- InterPro:   IPR016840 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.99 [H]

Molecular weight: Translated: 36396; Mature: 36396

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISNKMRALKVIIRIVVLLGLLFLIGFFFPHEQKEQVNLATDNFPDPTGIYEQGTYYAYA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEE
TSAEGLNIPLARSKSGKNYQIVGDALPALPDWAQGSIWAPHISQVGKRYLLYFSAIDKKS
ECCCCCCCCEECCCCCCCEEEECCCCCCCCCCCCCCEECHHHHHHHHHHEEEEHHHCCCC
KKRSIGLAWANKAQGPFKAEEKRVATDNSAGGLIDPDTFQDKDGQNYLLYKNDGNAIGKT
HHCEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCH
SSLWLQKLSKNGLEVTGKAERLLTNTEVANPNDNGKAGVVSTIEGPYLTKAPDGTYVLLF
HHHHHHHHHCCCCEEECCHHHHEECCCCCCCCCCCCCCEEEECCCCEEEECCCCCEEEEE
SGNSYVTSDYFTGYAISKKLSGPYQYQGALLTTASLKNQIVGPGGAELVQGKGSKETLLL
CCCCEEECCCCCCEEEEHHCCCCCEECCEEEEEHHHHHCCCCCCCHHHCCCCCCCCEEEE
HGWIKGVNTAESSRQLYELSFLWEEGHVPEVTK
EEECCCCCCCHHHHEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MISNKMRALKVIIRIVVLLGLLFLIGFFFPHEQKEQVNLATDNFPDPTGIYEQGTYYAYA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEE
TSAEGLNIPLARSKSGKNYQIVGDALPALPDWAQGSIWAPHISQVGKRYLLYFSAIDKKS
ECCCCCCCCEECCCCCCCEEEECCCCCCCCCCCCCCEECHHHHHHHHHHEEEEHHHCCCC
KKRSIGLAWANKAQGPFKAEEKRVATDNSAGGLIDPDTFQDKDGQNYLLYKNDGNAIGKT
HHCEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCH
SSLWLQKLSKNGLEVTGKAERLLTNTEVANPNDNGKAGVVSTIEGPYLTKAPDGTYVLLF
HHHHHHHHHCCCCEEECCHHHHEECCCCCCCCCCCCCCEEEECCCCEEEECCCCCEEEEE
SGNSYVTSDYFTGYAISKKLSGPYQYQGALLTTASLKNQIVGPGGAELVQGKGSKETLLL
CCCCEEECCCCCCEEEEHHCCCCCEECCEEEEEHHHHHCCCCCCCHHHCCCCCCCCEEEE
HGWIKGVNTAESSRQLYELSFLWEEGHVPEVTK
EEECCCCCCCHHHHEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]