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The map label for this gene is yecD [C]

Identifier: 125624387

GI number: 125624387

Start: 1559761

End: 1560348

Strand: Reverse

Name: yecD [C]

Synonym: llmg_1585

Alternate gene names: 125624387

Gene position: 1560348-1559761 (Counterclockwise)

Preceding gene: 125624388

Following gene: 125624386

Centisome position: 61.69

GC content: 38.44

Gene sequence:

>588_bases
ATGAAAACTTTGAATTTAAATAAAACAGCATTAGTCATCATCGATTTGCAAAAAGGAATTGCTGGTCGTGAAGGTTTTGC
TCCTTATTCTGCACAAGATGTATTGGCCAAAAATAAAGAGCTCGTAACAAGTTTAAAAAATACAGAAGCTTTGATTGTTT
TTGTTCATGTTAAAAATTATGGTGGAGAAGCTCTAAAACCAAAAACGGATAATCCCCCTCTTGCACATGGGCAAATACCA
GCGGACTTCTCTGATTTTGTCATGCCAGAGGCTTACGATAAAGACTATGACAATGTTATCCATGTTGCTAAACACAACTG
GGGGGCCTTTTATGGAACAAATTTAGATGTCCAATTGCGCCGCCGTGGAATTGAAGAAATTGTTCTGAGCGGAATTGCTA
CAACGATTGGTTGTGATACAACGGCTCGTGAAGCTTTCCAACATGGCTATCAAGTGATTGCCGTAGAAGATGCAATGACT
GATTTTAATGGAAGTTTGCACAAGGGAATTGTGGACGGAATTTTCACTAGACTTGGACGGGTGCGTTCAACACAAGAAGT
AGTAAAAATGATTGAAGAAAGTAAATAA

Upstream 100 bases:

>100_bases
CTGCCAAAGGTAAATTTACTGACAAAAAAGAGAATGGCAAAAAATTTACTGATGGAAGAAAAAAGCACACAAAAGACCTT
AAATTTTGAAAGAAGAAGAA

Downstream 100 bases:

>100_bases
GTTTAGGCCACCCATTTTACTGACAGAGATTTTCGGAGTCTTTGACAGTAAATTTCCTAAAATATTTAGTGAATAATATG
AAAAATCGTTTGAAATTAAT

Product: putative amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MKTLNLNKTALVIIDLQKGIAGREGFAPYSAQDVLAKNKELVTSLKNTEALIVFVHVKNYGGEALKPKTDNPPLAHGQIP
ADFSDFVMPEAYDKDYDNVIHVAKHNWGAFYGTNLDVQLRRRGIEEIVLSGIATTIGCDTTAREAFQHGYQVIAVEDAMT
DFNGSLHKGIVDGIFTRLGRVRSTQEVVKMIEESK

Sequences:

>Translated_195_residues
MKTLNLNKTALVIIDLQKGIAGREGFAPYSAQDVLAKNKELVTSLKNTEALIVFVHVKNYGGEALKPKTDNPPLAHGQIP
ADFSDFVMPEAYDKDYDNVIHVAKHNWGAFYGTNLDVQLRRRGIEEIVLSGIATTIGCDTTAREAFQHGYQVIAVEDAMT
DFNGSLHKGIVDGIFTRLGRVRSTQEVVKMIEESK
>Mature_195_residues
MKTLNLNKTALVIIDLQKGIAGREGFAPYSAQDVLAKNKELVTSLKNTEALIVFVHVKNYGGEALKPKTDNPPLAHGQIP
ADFSDFVMPEAYDKDYDNVIHVAKHNWGAFYGTNLDVQLRRRGIEEIVLSGIATTIGCDTTAREAFQHGYQVIAVEDAMT
DFNGSLHKGIVDGIFTRLGRVRSTQEVVKMIEESK

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

Organism=Escherichia coli, GI87081992, Length=200, Percent_Identity=36.5, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 21534; Mature: 21534

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLNLNKTALVIIDLQKGIAGREGFAPYSAQDVLAKNKELVTSLKNTEALIVFVHVKNY
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCEEEEEEEEECC
GGEALKPKTDNPPLAHGQIPADFSDFVMPEAYDKDYDNVIHVAKHNWGAFYGTNLDVQLR
CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHEEEEEECCCCEEECCCCCHHHH
RRGIEEIVLSGIATTIGCDTTAREAFQHGYQVIAVEDAMTDFNGSLHKGIVDGIFTRLGR
HCCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEECHHHHCCCHHHHHHHHHHHHHHHC
VRSTQEVVKMIEESK
CCCHHHHHHHHHCCC
>Mature Secondary Structure
MKTLNLNKTALVIIDLQKGIAGREGFAPYSAQDVLAKNKELVTSLKNTEALIVFVHVKNY
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCEEEEEEEEECC
GGEALKPKTDNPPLAHGQIPADFSDFVMPEAYDKDYDNVIHVAKHNWGAFYGTNLDVQLR
CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHEEEEEECCCCEEECCCCCHHHH
RRGIEEIVLSGIATTIGCDTTAREAFQHGYQVIAVEDAMTDFNGSLHKGIVDGIFTRLGR
HCCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEECHHHHCCCHHHHHHHHHHHHHHHC
VRSTQEVVKMIEESK
CCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]