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The map label for this gene is whiA [H]

Identifier: 125624358

GI number: 125624358

Start: 1527099

End: 1528016

Strand: Reverse

Name: whiA [H]

Synonym: llmg_1555

Alternate gene names: 125624358

Gene position: 1528016-1527099 (Counterclockwise)

Preceding gene: 125624359

Following gene: 125624356

Centisome position: 60.41

GC content: 35.73

Gene sequence:

>918_bases
ATGAGTTTCACAAGTGATGTAAAAAAAGAATTAACCCGTAATTTAGCCACAACTGGTGCCCTTCTTGCCCTTGTAAGAAT
GAATGGCTCTGTTGGAATTTTTAATGGTTTAACTTTATCGATTACGACAGAAAATGCTGGTACGGCTAAATACATTTATC
AAATGCTTCAAGAACTCTATGAAATTCATGCTGAGATTCGTGTTCATCAAAAAACAACACTTTCTAAAAATCGGGTTTAT
ACTGTTTTTATCACAGAGGGTGCTGGCGAATTATTAGATGAATTGAGTTTGGCTGATTCACTGATGCTGGATAATGGTGT
CCCTGAATTTGTTAAAAATGATGAATTCATTAAAAAAGACTATTTGCGTGGCGCATTTTTGTCGGCTGGAGCTTTGCATA
ACCCTGAAAAAGGGGAGTATCAATTATCCATCGCAAATGTTTATCAGGAACATGCTGAGGATTTACAAGAAATATTTCGA
GATTTTGGCTTAAATGCTCGAGTGATTGAACGAAAAAATCGGTGGATTCTTTATTTATCAAAAGCAGAAGAAATAATGGA
TTTTTTGACTTTGATTGGCGCAATGAAGGCGAGATTGAAATTTGAAGAAGCTAAAATTATGCGTGAAATGCGTGGGTTAG
CTAATCGTCAGTCCAATTTTGAAAATGCTAATATTGCTAAATCCGTAATGGCTGCTCAAGAAGCAATTGATGCCATTCAA
TTTCTTAATGAAAAAAAAGAATTGGAACAGCTTCCACCCTCTTTAAAAGAAATTGCTCGTTTACGTTTAGAAAATCCAGA
AGCAACGATTAAAGAATTGGGCGAATTACTGGACCCACCATTGGGAAAATCTGGAGTCAACCATCGACTGAGAAAACTGG
TTGAACGCTCGAATGATTTAAAAAAAGTTGAAAGTTAA

Upstream 100 bases:

>100_bases
ATTAAAAAATTACTGACAGGATTTGTCAGTAATTTTAAACGGATAAAGAGTTTAAGAGGAAGGAACAAGACAGGGTTTTT
TAACCTGAATAGAAAAAATT

Downstream 100 bases:

>100_bases
TAAAAACTGGCTTCATAATGAGCCAGTTTTTATTATTTCCAACCATTAAGAAAGAAGCGAGAAAGAAGTTCGGTTTTTTC
TAAAAGTCTTTCTATTGACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSFTSDVKKELTRNLATTGALLALVRMNGSVGIFNGLTLSITTENAGTAKYIYQMLQELYEIHAEIRVHQKTTLSKNRVY
TVFITEGAGELLDELSLADSLMLDNGVPEFVKNDEFIKKDYLRGAFLSAGALHNPEKGEYQLSIANVYQEHAEDLQEIFR
DFGLNARVIERKNRWILYLSKAEEIMDFLTLIGAMKARLKFEEAKIMREMRGLANRQSNFENANIAKSVMAAQEAIDAIQ
FLNEKKELEQLPPSLKEIARLRLENPEATIKELGELLDPPLGKSGVNHRLRKLVERSNDLKKVES

Sequences:

>Translated_305_residues
MSFTSDVKKELTRNLATTGALLALVRMNGSVGIFNGLTLSITTENAGTAKYIYQMLQELYEIHAEIRVHQKTTLSKNRVY
TVFITEGAGELLDELSLADSLMLDNGVPEFVKNDEFIKKDYLRGAFLSAGALHNPEKGEYQLSIANVYQEHAEDLQEIFR
DFGLNARVIERKNRWILYLSKAEEIMDFLTLIGAMKARLKFEEAKIMREMRGLANRQSNFENANIAKSVMAAQEAIDAIQ
FLNEKKELEQLPPSLKEIARLRLENPEATIKELGELLDPPLGKSGVNHRLRKLVERSNDLKKVES
>Mature_304_residues
SFTSDVKKELTRNLATTGALLALVRMNGSVGIFNGLTLSITTENAGTAKYIYQMLQELYEIHAEIRVHQKTTLSKNRVYT
VFITEGAGELLDELSLADSLMLDNGVPEFVKNDEFIKKDYLRGAFLSAGALHNPEKGEYQLSIANVYQEHAEDLQEIFRD
FGLNARVIERKNRWILYLSKAEEIMDFLTLIGAMKARLKFEEAKIMREMRGLANRQSNFENANIAKSVMAAQEAIDAIQF
LNEKKELEQLPPSLKEIARLRLENPEATIKELGELLDPPLGKSGVNHRLRKLVERSNDLKKVES

Specific function: May be required for sporulation [H]

COG id: COG1481

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the whiA transcriptional regulatory family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004042
- InterPro:   IPR003802
- InterPro:   IPR023054
- InterPro:   IPR018478 [H]

Pfam domain/function: PF02650 HTH_WhiA; PF10298 WhiA_N [H]

EC number: NA

Molecular weight: Translated: 34548; Mature: 34417

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS50819 INTEIN_ENDONUCLEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTSDVKKELTRNLATTGALLALVRMNGSVGIFNGLTLSITTENAGTAKYIYQMLQELY
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHH
EIHAEIRVHQKTTLSKNRVYTVFITEGAGELLDELSLADSLMLDNGVPEFVKNDEFIKKD
HHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHH
YLRGAFLSAGALHNPEKGEYQLSIANVYQEHAEDLQEIFRDFGLNARVIERKNRWILYLS
HHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEC
KAEEIMDFLTLIGAMKARLKFEEAKIMREMRGLANRQSNFENANIAKSVMAAQEAIDAIQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
FLNEKKELEQLPPSLKEIARLRLENPEATIKELGELLDPPLGKSGVNHRLRKLVERSNDL
HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHH
KKVES
HHCCC
>Mature Secondary Structure 
SFTSDVKKELTRNLATTGALLALVRMNGSVGIFNGLTLSITTENAGTAKYIYQMLQELY
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHH
EIHAEIRVHQKTTLSKNRVYTVFITEGAGELLDELSLADSLMLDNGVPEFVKNDEFIKKD
HHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHH
YLRGAFLSAGALHNPEKGEYQLSIANVYQEHAEDLQEIFRDFGLNARVIERKNRWILYLS
HHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEC
KAEEIMDFLTLIGAMKARLKFEEAKIMREMRGLANRQSNFENANIAKSVMAAQEAIDAIQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
FLNEKKELEQLPPSLKEIARLRLENPEATIKELGELLDPPLGKSGVNHRLRKLVERSNDL
HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHH
KKVES
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]