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The map label for this gene is xerS [H]

Identifier: 125624092

GI number: 125624092

Start: 1236405

End: 1237460

Strand: Direct

Name: xerS [H]

Synonym: llmg_1268

Alternate gene names: 125624092

Gene position: 1236405-1237460 (Clockwise)

Preceding gene: 125624091

Following gene: 125624093

Centisome position: 48.88

GC content: 34.85

Gene sequence:

>1056_bases
ATGTCAGAAAACCACGGTTATCAATACAATGTTAATAAACTAATGCTAGAATTTCCAAATTATGTTAACGAATATATTCA
ATCGAAAAGAGTTGTTCCGCTGAGTGAAGCGTCAATATATGAATATTGCTTAGACTTTAGAAAGTACCTCCAATGGCTCC
TTGATGGTAGTATAACAAATCATAATCAAATCAAAGAAATTACCTTGCAAGAATTAGAAAATGTAACCAAACATGAATTG
GAGGACTTTGTGTTACATGAGAGACTACGTTTGGAATCTAAATGTGGGTCAAACGCACATACTTCAGCATTAAATCGCAC
AATTGCAGCGATTAAGAGCTTATATAATTATTTATGTGAGCAAACTGAAGATGAACATGGAAATACATACATGACCAGAA
ATGTCAGTCGTTTAATTCATATCCGAAAAAAAAGCGAGACCTTGCATTACCGTGCGGCTCAACTGGAAGGTAAACTATTC
CTTGGAGACGAAACCAAAGCCTTTTTAGAATTTGTTGAACATAACTATGAAAATTCTATCAGTAACCGTGCGAGAACAAG
TTTCAAGAAAAATAAAATCAGAGATTTAGCTATATTAAGTCTTTTTTTATCTTCTGGATTACGTTGTGCGGAACTTGTAG
GGATCAATCTTGACGATTTAAACCTTGAAGCTGGGAAAGTAAGTGTGATGCGAAAAGAGGGAAAAAAAGACGTTGTCCCA
ATTGCCCAGTTTTCACACAAATATATAAATGATTATTTTGTGATAAGAAGTAGCATAGATACTGAGATACAAGCCTTTTT
CATAACAGATTACGACCAAAAAATAAGAAAAATCTCTAACGCTTCAATAAATAAGCTAGTGGCGAAGTATTCAGAAGCCT
ATAAAGTTCGTGTGACACCTCATACACTAAGACATACATTCGCAACGAGGCTCTATAATGTCAGTCACTCCCAAGTACTT
GTCAGCAACCAATTAGGGCATTCATCAACTAAACCTACAGAACTATATACCCACATTGTCAGTGCTGAAGCTAAAGATGC
ATTAAACAAGTTATAA

Upstream 100 bases:

>100_bases
AGTATTAAGTTTTGAGTTTATACAAAAATTGACAATACTTTAATATTTAACTACAATATATTCTAATTTGAATAGAAAAT
GTTGAGGAACAGTAAAAGAG

Downstream 100 bases:

>100_bases
ATTTCACAAACTATTTGAAATTTATTTACTGTTTGATTTTTGATATAATCAAGTTAACGTAATTAAATGACAAGGGAGTA
CTTATGAAAATCATTAAAGC

Product: site-specific tyrosine recombinase XerS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MSENHGYQYNVNKLMLEFPNYVNEYIQSKRVVPLSEASIYEYCLDFRKYLQWLLDGSITNHNQIKEITLQELENVTKHEL
EDFVLHERLRLESKCGSNAHTSALNRTIAAIKSLYNYLCEQTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKAFLEFVEHNYENSISNRARTSFKKNKIRDLAILSLFLSSGLRCAELVGINLDDLNLEAGKVSVMRKEGKKDVVP
IAQFSHKYINDYFVIRSSIDTEIQAFFITDYDQKIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALNKL

Sequences:

>Translated_351_residues
MSENHGYQYNVNKLMLEFPNYVNEYIQSKRVVPLSEASIYEYCLDFRKYLQWLLDGSITNHNQIKEITLQELENVTKHEL
EDFVLHERLRLESKCGSNAHTSALNRTIAAIKSLYNYLCEQTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKAFLEFVEHNYENSISNRARTSFKKNKIRDLAILSLFLSSGLRCAELVGINLDDLNLEAGKVSVMRKEGKKDVVP
IAQFSHKYINDYFVIRSSIDTEIQAFFITDYDQKIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALNKL
>Mature_350_residues
SENHGYQYNVNKLMLEFPNYVNEYIQSKRVVPLSEASIYEYCLDFRKYLQWLLDGSITNHNQIKEITLQELENVTKHELE
DFVLHERLRLESKCGSNAHTSALNRTIAAIKSLYNYLCEQTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLFL
GDETKAFLEFVEHNYENSISNRARTSFKKNKIRDLAILSLFLSSGLRCAELVGINLDDLNLEAGKVSVMRKEGKKDVVPI
AQFSHKYINDYFVIRSSIDTEIQAFFITDYDQKIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVLV
SNQLGHSSTKPTELYTHIVSAEAKDALNKL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerS subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=149, Percent_Identity=32.8859060402685, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1789261, Length=156, Percent_Identity=28.8461538461538, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40596; Mature: 40464

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENHGYQYNVNKLMLEFPNYVNEYIQSKRVVPLSEASIYEYCLDFRKYLQWLLDGSITN
CCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
HNQIKEITLQELENVTKHELEDFVLHERLRLESKCGSNAHTSALNRTIAAIKSLYNYLCE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
QTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLFLGDETKAFLEFVEHNYENSI
CCCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHH
SNRARTSFKKNKIRDLAILSLFLSSGLRCAELVGINLDDLNLEAGKVSVMRKEGKKDVVP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCH
IAQFSHKYINDYFVIRSSIDTEIQAFFITDYDQKIRKISNASINKLVAKYSEAYKVRVTP
HHHHHHHHHHHEEEEECCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHHCEEEEECH
HTLRHTFATRLYNVSHSQVLVSNQLGHSSTKPTELYTHIVSAEAKDALNKL
HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SENHGYQYNVNKLMLEFPNYVNEYIQSKRVVPLSEASIYEYCLDFRKYLQWLLDGSITN
CCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
HNQIKEITLQELENVTKHELEDFVLHERLRLESKCGSNAHTSALNRTIAAIKSLYNYLCE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
QTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLFLGDETKAFLEFVEHNYENSI
CCCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHH
SNRARTSFKKNKIRDLAILSLFLSSGLRCAELVGINLDDLNLEAGKVSVMRKEGKKDVVP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCH
IAQFSHKYINDYFVIRSSIDTEIQAFFITDYDQKIRKISNASINKLVAKYSEAYKVRVTP
HHHHHHHHHHHEEEEECCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHHCEEEEECH
HTLRHTFATRLYNVSHSQVLVSNQLGHSSTKPTELYTHIVSAEAKDALNKL
HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]