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The map label for this gene is rlmH

Identifier: 124485500

GI number: 124485500

Start: 648060

End: 648536

Strand: Reverse

Name: rlmH

Synonym: Mlab_0677

Alternate gene names: 124485500

Gene position: 648536-648060 (Counterclockwise)

Preceding gene: 124485501

Following gene: 124485499

Centisome position: 35.93

GC content: 48.64

Gene sequence:

>477_bases
ATGCAGATTCAGATCGTCTGCGTAGGAAAGATCAAAGACGCCTATATTTCATCCGGGGTTGTCGAGTTTGAAAAACGTCT
GCGGCCTTACGGGAAGATTTTCATCACGGAACTTGCCGAAGTGAAAATCCCGGATAACGCCTCGGCATCGGATGAACTCC
GCGTGAAGGAGAGAGAAGGAGAACTGATCCTGGCAAATGTCAAGGAGGGATTCTTTAAAATCGCTCTTGACCCGAACGGG
ATGTCTCTCTCGAGCGAAGAGTTTTCCGATGTATTTCGCGATGCGAAATTATCCGGAAAGAACCTCTGCTTCATCATCGG
CGGACCTCTTGGCCTGTCACCAAAATTGCTCCAATCGGTCGAAAAAAAACTGTCATTATCCCGTATGACCTTTACTCACC
CCATGACCAGGCTTATTCTCCTCGAACAGGTGTATCGCGCGTTTCGGATCCTGAACGGCGAACCCTACCACAAATAA

Upstream 100 bases:

>100_bases
TCTCGAGTCTGTGGGCAGACTCAAAGAAGCCATCGGGTATTACGACAGAATCGTGCAGCTCTCGGAGATCGATAAAGAGA
TGGGACCATCCGAGGACTGA

Downstream 100 bases:

>100_bases
CAGCGTATGGCCATGTTACCTGTTGTCATGTAGCATCAATATTATACGTGGTTAGTTCCAACATATAAGTACCATGAAAT
TGGTATACACCGGCAAAACA

Product: hypothetical protein

Products: NA

Alternate protein names: rRNA (pseudouridine-N3-)-methyltransferase rlmH

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MQIQIVCVGKIKDAYISSGVVEFEKRLRPYGKIFITELAEVKIPDNASASDELRVKEREGELILANVKEGFFKIALDPNG
MSLSSEEFSDVFRDAKLSGKNLCFIIGGPLGLSPKLLQSVEKKLSLSRMTFTHPMTRLILLEQVYRAFRILNGEPYHK

Sequences:

>Translated_158_residues
MQIQIVCVGKIKDAYISSGVVEFEKRLRPYGKIFITELAEVKIPDNASASDELRVKEREGELILANVKEGFFKIALDPNG
MSLSSEEFSDVFRDAKLSGKNLCFIIGGPLGLSPKLLQSVEKKLSLSRMTFTHPMTRLILLEQVYRAFRILNGEPYHK
>Mature_158_residues
MQIQIVCVGKIKDAYISSGVVEFEKRLRPYGKIFITELAEVKIPDNASASDELRVKEREGELILANVKEGFFKIALDPNG
MSLSSEEFSDVFRDAKLSGKNLCFIIGGPLGLSPKLLQSVEKKLSLSRMTFTHPMTRLILLEQVYRAFRILNGEPYHK

Specific function: Unknown

COG id: COG1576

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase rlmH family

Homologues:

Organism=Escherichia coli, GI1786855, Length=158, Percent_Identity=31.6455696202532, Blast_Score=94, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RLMH_METLZ (A2SR93)

Other databases:

- EMBL:   CP000559
- RefSeq:   YP_001030116.1
- ProteinModelPortal:   A2SR93
- SMR:   A2SR93
- STRING:   A2SR93
- GeneID:   4794544
- GenomeReviews:   CP000559_GR
- KEGG:   mla:Mlab_0677
- eggNOG:   arNOG12363
- HOGENOM:   HBG622807
- OMA:   TANHPYH
- PhylomeDB:   A2SR93
- BioCyc:   MLAB410358:MLAB_0677-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00658
- InterPro:   IPR003742
- PIRSF:   PIRSF004505

Pfam domain/function: PF02590 SPOUT_MTase

EC number: NA

Molecular weight: Translated: 17807; Mature: 17807

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIQIVCVGKIKDAYISSGVVEFEKRLRPYGKIFITELAEVKIPDNASASDELRVKEREG
CEEEEEEEECCCHHHHHCCHHHHHHHCCHHHHEEEEHHHEEECCCCCCCCCCEEEEECCC
ELILANVKEGFFKIALDPNGMSLSSEEFSDVFRDAKLSGKNLCFIIGGPLGLSPKLLQSV
CEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHH
EKKLSLSRMTFTHPMTRLILLEQVYRAFRILNGEPYHK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQIQIVCVGKIKDAYISSGVVEFEKRLRPYGKIFITELAEVKIPDNASASDELRVKEREG
CEEEEEEEECCCHHHHHCCHHHHHHHCCHHHHEEEEHHHEEECCCCCCCCCCEEEEECCC
ELILANVKEGFFKIALDPNGMSLSSEEFSDVFRDAKLSGKNLCFIIGGPLGLSPKLLQSV
CEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHH
EKKLSLSRMTFTHPMTRLILLEQVYRAFRILNGEPYHK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA