Click here to switch to the map view.

The map label for this gene is sufC [C]

Identifier: 124485494

GI number: 124485494

Start: 641882

End: 642610

Strand: Reverse

Name: sufC [C]

Synonym: Mlab_0671

Alternate gene names: 124485494

Gene position: 642610-641882 (Counterclockwise)

Preceding gene: 124485498

Following gene: 124485493

Centisome position: 35.6

GC content: 47.87

Gene sequence:

>729_bases
ATGCTTGAAATCGAAAACCTGCATGTGGAAGTTGGCGGACGTGAAGTTCTGCACGGCATATCATTAACCGTGCCTGACGG
ACAGACCCATGTCCTCCTTGGCCCGAACGGGTCAGGAAAAACCACCCTTCTTCGTACAATTATGGGCTTTGCTTCTTCCA
AAGTAACCTCCGGTAAAATAATATTCAACGGCGTTGATGTCACGAATAAACCGGTTCACGAACGTGCAAAACTTGGAATG
GGCATCATGTTCCAGCGCCCGCCTACAATATCCGGTCTGAAACTCGGCAAATTCATCACTGCAACAAATAACATCGATGA
AGCTCGGATCCCAATAATCGTGGAAAAACTGCACATGACGAAATTCCTCGATAGAGACGTCAATGCGGGATTTTCCGGCG
GCGAGATAAAACGCAGTGAAATTCTGCAGCTTACTGTTCAGAATCCGTCTTTTGTGATGCTGGATGAGCCGGAAAGCGGC
GTCGATGTGGAAAATATGGCCCTTCTTGGAAATGCCGCGGCATCCCTTCTCGAGAAGGAGATCCACATGAAGAACCGTAC
CAAATCGGGACTTATCATCACGCACACCGGATATATCCTCGATTATCTCGAGGCGGATGTCGGATATGTTCTGATCGACG
GATATCTGCAGTGCAGCGGGAACCCGCGTGAAATTCTCAAAAGTGTGAAAACATCAGGATACAAGGACTGTATATCATGC
AGGAAATGA

Upstream 100 bases:

>100_bases
TGCAGAAAAATGCTAGATAATCCAGCTGAACTCCGGGAGATACACTGATCAAATACACATCTTTACAATTACAGACGACA
TAACACGTACGTGATTTTTC

Downstream 100 bases:

>100_bases
ATGGATTCTCAGGGATCAGTCCCGAAGATAAAGAACGTCTTGCCTTGACCGGAATCCACACGGATTCCATGGAAGGACGT
GCAGGGAGTTTCCTCCTCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MLEIENLHVEVGGREVLHGISLTVPDGQTHVLLGPNGSGKTTLLRTIMGFASSKVTSGKIIFNGVDVTNKPVHERAKLGM
GIMFQRPPTISGLKLGKFITATNNIDEARIPIIVEKLHMTKFLDRDVNAGFSGGEIKRSEILQLTVQNPSFVMLDEPESG
VDVENMALLGNAAASLLEKEIHMKNRTKSGLIITHTGYILDYLEADVGYVLIDGYLQCSGNPREILKSVKTSGYKDCISC
RK

Sequences:

>Translated_242_residues
MLEIENLHVEVGGREVLHGISLTVPDGQTHVLLGPNGSGKTTLLRTIMGFASSKVTSGKIIFNGVDVTNKPVHERAKLGM
GIMFQRPPTISGLKLGKFITATNNIDEARIPIIVEKLHMTKFLDRDVNAGFSGGEIKRSEILQLTVQNPSFVMLDEPESG
VDVENMALLGNAAASLLEKEIHMKNRTKSGLIITHTGYILDYLEADVGYVLIDGYLQCSGNPREILKSVKTSGYKDCISC
RK
>Mature_242_residues
MLEIENLHVEVGGREVLHGISLTVPDGQTHVLLGPNGSGKTTLLRTIMGFASSKVTSGKIIFNGVDVTNKPVHERAKLGM
GIMFQRPPTISGLKLGKFITATNNIDEARIPIIVEKLHMTKFLDRDVNAGFSGGEIKRSEILQLTVQNPSFVMLDEPESG
VDVENMALLGNAAASLLEKEIHMKNRTKSGLIITHTGYILDYLEADVGYVLIDGYLQCSGNPREILKSVKTSGYKDCISC
RK

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9955963, Length=178, Percent_Identity=29.2134831460674, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI47078218, Length=233, Percent_Identity=26.6094420600858, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI45446740, Length=233, Percent_Identity=26.6094420600858, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787972, Length=249, Percent_Identity=35.7429718875502, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789593, Length=236, Percent_Identity=30.5084745762712, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788761, Length=180, Percent_Identity=32.7777777777778, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI87081709, Length=240, Percent_Identity=27.0833333333333, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787370, Length=226, Percent_Identity=30.0884955752212, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081791, Length=169, Percent_Identity=29.585798816568, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787029, Length=249, Percent_Identity=27.3092369477912, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI87082268, Length=171, Percent_Identity=30.9941520467836, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1790467, Length=168, Percent_Identity=30.952380952381, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787089, Length=255, Percent_Identity=24.3137254901961, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788165, Length=225, Percent_Identity=25.7777777777778, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790739, Length=240, Percent_Identity=24.1666666666667, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081834, Length=169, Percent_Identity=30.1775147928994, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786345, Length=240, Percent_Identity=27.5, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789672, Length=181, Percent_Identity=29.2817679558011, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787712, Length=168, Percent_Identity=27.9761904761905, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786253, Length=150, Percent_Identity=29.3333333333333, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1786563, Length=201, Percent_Identity=28.8557213930348, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71992285, Length=238, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17543740, Length=167, Percent_Identity=27.5449101796407, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=230, Percent_Identity=25.6521739130435, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221512771, Length=251, Percent_Identity=30.6772908366534, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26391; Mature: 26391

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEIENLHVEVGGREVLHGISLTVPDGQTHVLLGPNGSGKTTLLRTIMGFASSKVTSGKI
CCEEEEEEEEECCHHEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEE
IFNGVDVTNKPVHERAKLGMGIMFQRPPTISGLKLGKFITATNNIDEARIPIIVEKLHMT
EEECCCCCCCCHHHHHHCCCCEEEECCCCCCCEEECEEEEECCCCCCCCCCEEEHHHHHH
KFLDRDVNAGFSGGEIKRSEILQLTVQNPSFVMLDEPESGVDVENMALLGNAAASLLEKE
HHHHCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
IHMKNRTKSGLIITHTGYILDYLEADVGYVLIDGYLQCSGNPREILKSVKTSGYKDCISC
HHHCCCCCCCEEEEECCHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHCCCCHHHHHC
RK
CC
>Mature Secondary Structure
MLEIENLHVEVGGREVLHGISLTVPDGQTHVLLGPNGSGKTTLLRTIMGFASSKVTSGKI
CCEEEEEEEEECCHHEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEE
IFNGVDVTNKPVHERAKLGMGIMFQRPPTISGLKLGKFITATNNIDEARIPIIVEKLHMT
EEECCCCCCCCHHHHHHCCCCEEEECCCCCCCEEECEEEEECCCCCCCCCCEEEHHHHHH
KFLDRDVNAGFSGGEIKRSEILQLTVQNPSFVMLDEPESGVDVENMALLGNAAASLLEKE
HHHHCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
IHMKNRTKSGLIITHTGYILDYLEADVGYVLIDGYLQCSGNPREILKSVKTSGYKDCISC
HHHCCCCCCCEEEEECCHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHCCCCHHHHHC
RK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12122206; 12799345 [H]